Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3511 ATGCCATCTAGCTCAAGTGGgatgaaaaaattaagatttaatttagaTTCTCTACCTCTGCCTCTTCCCGGTCGTGGAAGGAAAAGAACATCGAAGTCCTTTAGGCTAGGAGTGAAGAGGGGTTCAGATGGTCTAAAGACATTTGGAAGATCACTCAAGAGTGGAGTCACTACTTGGGCAGTATTTCCAGAAGATCTTAAAGTGTCagagaaaaaagtatttgaTCCTCAAGATAAGAACCTTCTGTATTGGAACAAGTTTTTCGAGATTCTGTGCATTTTTTCTGTAGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCGTTTTGCCTAGCCATAGATAACAAGCTAGCAAGGTTCACTGTCACATTGAGAACAATATGCGATGCCATTTATCTCGTCCGCATAAGTTTTCAATTCCGCACTGCTTACATTGCACCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTGCAAAGATTGCCAAGAGATATTTACAACGTTATTTCATCATTGACTTCATTTCTGTGCTGCCAATGCCACAGATTGTAGTGTGGAAATATCTTTACAGAAAAGGACGTGCAGAGGTATTGGCCACAAAAACGGCACTGTTGAGAATTGTCATCCTGCAGTATTTTCCAAGATTTATACGCTTTTTACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGTGCCATGTACTATTTGATCTGGTACATGCTTGCAAGTCATATAACTGGCTCAGTCTGGTACTTGCTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAAAGAAGTAGAAAAATGCGATACACATTTCTTGTACTGTGCGAATTCGAACAAGCATATGTCAGGGTATGAAAGTTGGAGAAATGTCAGCGAGACTGTTCTTAAAACTCATTGCTTTGTTAAGGATGATGCCTCAGAATTTAACTATGGAATCTTCTCTCAGGCTATACAGTCTGGTATTGTTGCTTCCATACAAGTTTTTCCTAAATTCTGTTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGGCGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCAAGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAATGGCTGAACACCCGTGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGACGAACGGTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGCACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATTCGTGGGCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACGTGGGCACTGGACCCCAAATCTGCTGCTAACTTGCCATCATCAACGAGGACAGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTCAGGCACATTCACAGTAGACAGGTTCAGCACACCTTCCGTTTCTATTCGCAGCAGTGGAGAACGTGGGCTGCTATATACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGAAAAATTGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATGTGATTCTGATTATGAAAACAGTGATGATTCAGCAAGGGCCTTGGTCAAGCGTACCGGgacttctctttcttcttctagcCTTGGACTCGGTACAACCGTCTATGCTTCTCGCTTTGCTGCTAATGCACTTCGTGCTCATAGGCTTCGTGGTTCAAGTTCCAGCGACACAATCAAAATCCAAAAGCCCCCGGAACCTGACTTTAGTGATCTTGATGAAAACTGA 2172 0.4208 MPSSSSGMKKLRFNLDSLPLPLPGRGRKRTSKSFRLGVKRGSDGLKTFGRSLKSGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNKLARFTVTLRTICDAIYLVRISFQFRTAYIAPSSRVFGRGELVIDPAKIAKRYLQRYFIIDFISVLPMPQIVVWKYLYRKGRAEVLATKTALLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVEKCDTHFLYCANSNKHMSGYESWRNVSETVLKTHCFVKDDASEFNYGIFSQAIQSGIVASIQVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELCDSDYENSDDSARALVKRTGTSLSSSSLGLGTTVYASRFAANALRAHRLRGSSSSDTIKIQKPPEPDFSDLDEN 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3511 723 SUPERFAMILY Voltage-gated potassium channels 76 405 - -
Ssu4g3511 723 SMART cnmp_10 483 614 IPR000595 -
Ssu4g3511 723 Gene3D - 85 408 - -
Ssu4g3511 723 ProSiteProfiles IQ motif profile. 619 648 IPR000048 GO:0005515
Ssu4g3511 723 Gene3D Helix hairpin bin 410 474 - -
Ssu4g3511 723 CDD CAP_ED 483 614 IPR000595 -
Ssu4g3511 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 23 720 - -
Ssu4g3511 723 Pfam Ion transport protein 83 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu4g3511 723 SUPERFAMILY cAMP-binding domain-like 413 603 IPR018490 -
Ssu4g3511 723 MobiDBLite consensus disorder prediction 697 723 - -
Ssu4g3511 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 720 - -
Ssu4g3511 723 Gene3D Jelly Rolls 481 601 IPR014710 -
Ssu4g3511 723 Pfam Cyclic nucleotide-binding domain 504 593 IPR000595 -
Ssu4g3511 723 ProSiteProfiles cAMP/cGMP binding motif profile. 483 566 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3511 Ssu-Chr4 86110494 86114907 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3511 1 717 Ion Channels AT1G15990 69.051 0.0 990
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3511 K05391 - gmx:100810453 1328.92