Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3506 ATGCCATCTAGCTCAAGTGGgatgaaaaaattaagatttaatttagaTTCTCTACCTCTGCCTCTTCCCGGTCGTGGAAGGAAAAGAACATCGAAGTCCTTTAGGCTAGGAGTGAAGAGGGGTTTCAGATGGTCTAAAGACATTTGGAAGATCACTCAAGAGTGGAGTCACTACTTGGGCACTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCGTTTTGCCTAGCCATAGATAACAAGCTAGCAAGGTTCACTGTCACATTGAGAACAATATGCGATGCCATTTATCTCGTCCGCATAAGTTTTCAATTCCGCACTGCTTACATTGCACCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTGCAAAGATTGCCAAGAGATATTTACAACGTTATTTCATCATTGACTTCATTTCTGTGCTGCCAATGCCACAGATTGTAGTGTGGAAATATCTTTACAGAAAAGGACGTGCAGAGGTATTGGCCACAAAAACGGCACTGTTGAGAATTGTCATCCTGCAGTATTTTCCAAGATTTATACGCTTTTTACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGTGCCATGTACTATTTGATCTGGTACATGCTTGCAAGTCATATAACTGGCTCAGTCTGGTACTTGCTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAAAGAAGTAGAAAAATGCGATACACATTTCTTGTACTGTGCGAATTCGAACAAGCATATGTCAGGGTATGAAAGTTGGAGAAATGTCAGCGAGACTGTTCTTAAAACTCATTGCTTTGTTAAGGATGATGCCTCAGAATTTAACTATGGAATCTTCTCTCAGGCTATACAGTCTGGTATTGTTGCTTCCATACAAGTTTTTCCTAAATTCTGTTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGGCGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCAAGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAATGGCTGAACACCCGTGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGACGAACGGTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGCACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATTCGTGGGCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACGTGGGCACTGGACCCCAAATCTGCTGCTAACTTGCCATCATCAACGAGGACAGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTCAGGCACATTCACAGTAGACAGGTTCAGCACACCTTCCGTTTCTATTCGCAGCAGTGGAGAACGTGGGCTGCTATATACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGAAAAATTGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATGTGATTCTGATTATGAAAACAGTGATGATTCAGCAAGGGCCTTGGTCAAGCGTACCGGgacttctctttcttcttctagcCTTGGACTCGGTACAACCGTCTATGCTTCTCGCTTTGCTGCTAATGCACTTCGTGCTCATAGGCTTCGTGGTTCAAGTTCCAGCGACACAATCAAAATCCAAAAGCCCCCGGAACCTGACTTTAGTGATCTTGATGAAAACTGA 2064 0.4273 MPSSSSGMKKLRFNLDSLPLPLPGRGRKRTSKSFRLGVKRGFRWSKDIWKITQEWSHYLGTCDPFFFYLPYFNHKSFCLAIDNKLARFTVTLRTICDAIYLVRISFQFRTAYIAPSSRVFGRGELVIDPAKIAKRYLQRYFIIDFISVLPMPQIVVWKYLYRKGRAEVLATKTALLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVEKCDTHFLYCANSNKHMSGYESWRNVSETVLKTHCFVKDDASEFNYGIFSQAIQSGIVASIQVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELCDSDYENSDDSARALVKRTGTSLSSSSLGLGTTVYASRFAANALRAHRLRGSSSSDTIKIQKPPEPDFSDLDEN 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3506 687 Gene3D Jelly Rolls 445 565 IPR014710 -
Ssu4g3506 687 ProSiteProfiles cAMP/cGMP binding motif profile. 447 530 IPR000595 -
Ssu4g3506 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 62 684 - -
Ssu4g3506 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 684 - -
Ssu4g3506 687 SUPERFAMILY Voltage-gated potassium channels 76 369 - -
Ssu4g3506 687 CDD CAP_ED 447 578 IPR000595 -
Ssu4g3506 687 SMART cnmp_10 447 578 IPR000595 -
Ssu4g3506 687 Gene3D Helix hairpin bin 374 438 - -
Ssu4g3506 687 SUPERFAMILY cAMP-binding domain-like 377 567 IPR018490 -
Ssu4g3506 687 MobiDBLite consensus disorder prediction 661 687 - -
Ssu4g3506 687 Pfam Cyclic nucleotide-binding domain 468 557 IPR000595 -
Ssu4g3506 687 Pfam Ion transport protein 69 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu4g3506 687 Gene3D - 67 372 - -
Ssu4g3506 687 ProSiteProfiles IQ motif profile. 583 612 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3506 Ssu-Chr4 86081877 86086290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3506 1 681 Ion Channels AT1G15990 65.789 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3506 K05391 - gmx:100810453 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3506 4 86081877 86086290 Ssu4g3506 4 86081877 86086290 ECH