Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3499 ATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCCCGCAGAGTTCATGAAGAAGTTCCcAAGAAGGTAGAAAGCAAGCCTTTCTCGTTGGGAATGCCCAAGTTTAACGTGGAAGAAGAGTCCACTAGTGACTTGGAGGAGGAACTTAAGCGGGTGACTGCAGAGAACAAGAAGTTGGCCGAAATGCTCTCAGTGGTGTGTGAGAACTACAACACTTTGCGAAGCCATTTGATGGAATATATGAGGAAAAATCATGAAAAGGAGGTCAGCCCAACTTCAAAGAAAAGGAAGTCCGAAAGCAGCAACAACAATAGCAATTGTCTGATGGGAACTAACAATGGAAACTCAGAGAGCAGCTCTACTGATGAAGAATCTTGCAAGAAACCGAGGGAAGAAACCATCAAAGCAAAGATTTCAAGAGTTTATGTCAGGACCGAAGCATCTGATACTAGCCTTATTGTGAAAGATGGATACCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCCTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCAGTCCTGGTGGCTACTTATGAAGGGGAGCACAATCACCCCCAGGCTTCTCAAATGGAGGTAACATCAGGTGCTGGCCGAAGTGTGACCCTTGGTTCAGTGCCTTGTTCAGCATCTCTCAGTTCTTCCACTCCAACAGTTGTTACCCTTGACTTGACAAAATCTAAGGGCAGCAACGATTCCAAGAGCATTAAACCTAAAGTAGATTCACCTAAAGTACCGCAGGTTTTGGTGGAACAGATGGCTACTTCTTTGACCACGGATCCCAATTTCAGAGCGGCACTTGTTGCTGCCATCTCGGGAAGATTGTTGCACaataattaa 936 0.4434 MDCSSWINTSLDLNINPRRVHEEVPKKVESKPFSLGMPKFNVEEESTSDLEEELKRVTAENKKLAEMLSVVCENYNTLRSHLMEYMRKNHEKEVSPTSKKRKSESSNNNSNCLMGTNNGNSESSSTDEESCKKPREETIKAKISRVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQASQMEVTSGAGRSVTLGSVPCSASLSSSTPTVVTLDLTKSKGSNDSKSIKPKVDSPKVPQVLVEQMATSLTTDPNFRAALVAAISGRLLHNN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3499 311 MobiDBLite consensus disorder prediction 89 135 - -
Ssu4g3499 311 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g3499 311 Gene3D WRKY domain 142 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g3499 311 Coils Coil 40 67 - -
Ssu4g3499 311 MobiDBLite consensus disorder prediction 101 125 - -
Ssu4g3499 311 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 311 IPR044810 GO:0003700
Ssu4g3499 311 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g3499 311 SUPERFAMILY WRKY DNA-binding domain 156 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g3499 311 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g3499 311 PANTHER TRANSCRIPTION FACTOR 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3499 Ssu-Chr4 86026264 86027728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3499 4 311 WRKY Transcription Factor Family AT1G80840 54.232 8.66e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g3499 WRKY 3.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3499 - - gmx:100807966 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3499 4 86026264 86027728 Ssu4g3499 4 86026264 86027728 ECH