Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3497 ATGGATCCCCTGAACGAAGACACCCGCGCCAACCCGAGAAGCATAATCTTCAACAAGTACGAGATGGGGCGGGTGCTGGGGCAGGGAAACTTCGCGAAAGTGTACCACGGGAGAAACCTAGCCACCAACGAGAGCGTGGCCATAAAGGTGATAAAGAAAGAGAAGCTGAAAAAGGAGAGGCTCGTGAAGCAGATCAAGCGCGAGGTGTCGGTGATGAGGCTGGTGCGGCACCCCCACATCGTGGAGCTCAAGGAAGTGATGGCCACCAAGGGAAAAATCTTCCTCGTTATGGAATACGTCAAGGGCGGCGAGCTCTTCGCCAAGGTCGCCAAAGGAAAACTCGCCGAGGACCTCGCCAGAAAGTACTTCCAACAGCTCATCAGCGCCGTCGACTTCTGCCACAGCCGCGGCGTCACCCACCGCGACCTCAAGCCGGAGAACCTCCTCCTCGACCAGAACGAGGACCTCAAGGTCTCCGACTTCGGACTCTCCGCCCTGCCGGAGCAGTGCCGCGCCGACGGCATGCTCGTCACGCCCTGCGGCACCCCGGCGTATGTTGCACCGGaggttttaaagaaaaaaggctATGACGGTTCCAAGGCCGATATATGGTCCTGCGGGGTCATTCTCTACGCGCTGCTTTGTGGGTATTTACCCTTTCAAGGGGAGAACGTTATGAGGATTTATAGAAAAGCCTTCAGGGCTGAATACGAGTTCCCCGATTGGATCTCGCCGCAGGCCAAATCCCTCATTTCGAATCTCCTCGTTGCTGACCCGGGAAAGAGGTATTCCATTCCGGACATAATGAAGGACCCGTGGTTTCAAATTGGGTTTATGAGGCCCATTGCGTTCTCGATGAAGGAGTCCGCGGTTGAAGGCAACGTTGATTTCAACGACGAGGAAGAAGTGGCAATGGGGAAACCTGCCAGGCCGTTTTACAATGCGTTCGAGATAATCTCCTCGCTCTCGCACGGGTTTGATCTTAGGAATTTGTTTGAGACCAGGAAGCGGTCGCCGTCGGTGTTCACGTGCAAGTTCTCCGCGTCCGCGGTGTTGGCCAAGGTCGAGGCGGTGGCGAAGAAGCTCAACTTTAGGGTCACGGGGAAGAAGGAGTTTGTGGTGAGGATGCAGGGGGCCGAGGAGGGGCGGAAGGGGAGGCTGGCCGTCACGGTGGAGGTGTTCGAGGTCGCGCCGGAGGTGGCGGTGGTGGAGTTTTCTAAGTCCGCCGGAGACACGCTGGAGTATGTTAAGTTCTGTGAGGAACAGGTGAGGCCTTCCCTCAAAGACATCGTTTGGAGCTGGCAGGGTGATAGTAACTCCGACAATCAGTAG 1332 0.5593 MDPLNEDTRANPRSIIFNKYEMGRVLGQGNFAKVYHGRNLATNESVAIKVIKKEKLKKERLVKQIKREVSVMRLVRHPHIVELKEVMATKGKIFLVMEYVKGGELFAKVAKGKLAEDLARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDQNEDLKVSDFGLSALPEQCRADGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYRKAFRAEYEFPDWISPQAKSLISNLLVADPGKRYSIPDIMKDPWFQIGFMRPIAFSMKESAVEGNVDFNDEEEVAMGKPARPFYNAFEIISSLSHGFDLRNLFETRKRSPSVFTCKFSASAVLAKVEAVAKKLNFRVTGKKEFVVRMQGAEEGRKGRLAVTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEEQVRPSLKDIVWSWQGDSNSDNQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3497 443 Gene3D Transferase(Phosphotransferase) domain 1 100 277 - -
Ssu4g3497 443 PANTHER CBL-INTERACTING PROTEIN KINASE 16 12 441 - -
Ssu4g3497 443 Pfam NAF domain 312 367 IPR004041 GO:0007165
Ssu4g3497 443 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3497 443 PANTHER - 12 441 - -
Ssu4g3497 443 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Ssu4g3497 443 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3497 443 CDD CIPK_C 314 428 - -
Ssu4g3497 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Ssu4g3497 443 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3497 443 Coils Coil 48 68 - -
Ssu4g3497 443 Gene3D Phosphorylase Kinase; domain 1 13 99 - -
Ssu4g3497 443 Gene3D Kinase associated domain 1, KA1 309 433 - -
Ssu4g3497 443 SUPERFAMILY Protein kinase-like (PK-like) 16 322 IPR011009 -
Ssu4g3497 443 ProSiteProfiles NAF domain profile. 308 333 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3497 Ssu-Chr4 85953486 85954817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3497 3 442 CBL-interacting serine-threonine protein kinases AT5G25110 61.161 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu4g3497 Pkinase 4.4e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3497 - - gmx:100812424 768.074