Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3496 ATGACTGTCACAGGTTCATCTTCTGGGCAGCCGCAATTCATTGCCAGCACCGGTAACCGGAGCTTGTCGAATGCGCCGTTGATTGACAACTCAAATACCGATCAAATTGTTGTACCTGATAGGAAAAGCTGGAAAAACTTATTTGCATACGTGGGGCCTGGATTTCTTGTTTCTATTGCATATATCGACCCAGGAAACTTTGAGACAGATCTTCAATCAGGGGCACAATATAAATATGAGTTACTTTGGATCATTTTGGTGGCGTCATGTGCTGCTCTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTTACTGGAATGCACCTAGCAGAGCACTGTAGAACTGAATATTCTCGGGTGCCCAACTTTATCCTTTGGGTGATTGCTGAAATTGCCGTAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGGTTGGTGTTCTTCTGACAGGACTCAGTACATTGATTCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTTACAATTGCTGCTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTCGCCAAAGAAGTTGTGACGGGTCTTTTTGTTCCAAAACTCCAGGGGCATGGTGCCACCGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCGCACAATCTCTTCCTCCACTCAGCGCTGGTTCTTTCCAGGAAAATACCTCGATCAGTTCGTGGAATCAAAgAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTCCTCATAAATATTTCCGTTATTTCTGTAAGTGGTGCAGTTTGCAATTCTTCAAACTTAAGTGCTGAAGATCAGAATAACTGTCAGGATTTGGATTTGAACAAGGCCTCCTTCTTATTAAGAAATGTCATGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATACGTCATGCAgGGATTTCTTGATTTGAGACTGAAGTCATGGATTCGGAATCTGCTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGGGGCTCTGCTGGAGCTGGGAAGCTCATCATAATTGCATCGATGATTTTATCTTTCGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAACCAAGATGGGACAACATGTCAACTCAATCACGATTTCGGCTGTTACTTGGATCATTGGTTTCCTCATCATgggcataaatatatattatttattgactaGCTTTGTCAACTTGCTTCTTCATATCCACTTAAAAATTGTTCCTAAGGTGTTTCTCGGGATATTGGGAATATCGGGTGTGACAGTATATATGGGAGGCATTGCGTATCTAGTGTTTCGCAAAAATAGAAAGGCTACACACATTTTGGCATTTAGTACACCAGAAGATCAGCAAGTGGCAAATGAACAAGGCGATATATCAATGTATAGTCTCCCAAGAGAAGACATAGTAAGCATGCAATTGCCTAAAAAAAGTAGTCCGGCAGAAATTGATTGA 1635 0.4147 MTVTGSSSGQPQFIASTGNRSLSNAPLIDNSNTDQIVVPDRKSWKNLFAYVGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRTEYSRVPNFILWVIAEIAVVACDIPEVIGTAFALNMLFNIPVWVGVLLTGLSTLILLALQQYGVRKLEFFIAFLVFTIAACFMAELGYAKPVAKEVVTGLFVPKLQGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSAEDQNNCQDLDLNKASFLLRNVMGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGQHVNSITISAVTWIIGFLIMGINIYYLLTSFVNLLLHIHLKIVPKVFLGILGISGVTVYMGGIAYLVFRKNRKATHILAFSTPEDQQVANEQGDISMYSLPREDIVSMQLPKKSSPAEID 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3496 544 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 Hamap Divalent metal cation transporter MntH [mntH]. 39 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g3496 544 PANTHER METAL TRANSPORTER NRAMP1 11 544 - -
Ssu4g3496 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 11 544 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3496 Ssu-Chr4 85922052 85928434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3496 15 537 Inorganic Solute Cotransporters AT1G15960 78.857 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3496 K21398 - gmx:100815628 971.459