Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3494 ATGCCTGCTGACACGTCATCAGTTTCCGGCGAAACCGTGTGCGTGACCGGCGCCGGCGGTTTCATAGCCTCTTGGCTTGTCAAACTTCTCCTAGAGAAAGGCTACACTGTGAGAGGAACCGTGCGAAACCCAGATGATCCCAAGAATGGTCATTTGAAAGAGTTGGAAGGAGCCAGGGAGAGGCTAACTCTGCATAAAGTTGATCTCTTCGATATTGACTCCATTAAAGCTTCTATTCACGGTTGCCACGGTGTCTTCCACACTGCCTCTCCGGTCACGGACAACCCTGAAGAGATGGTGGAGCCAGCAGTGAATGGAACCAAGAATGTGATCATAGCAGCTGCAGATGCAAAAGTGCGACGCGTGGTGTTCACTTCGTCAATTGGCACCGTCTATATGGACCCCAATACGAGTAGGGATGGGTTGGTTGATGAATCATTCTGGAGTGATTTGGAGTACTGCAAGAACACCAAGAACTGGTATTGCTATGGGAAGACCGTGGCTGAACGAGCAGCATGGGATATAGCAAAGGAGAGAGGGGTGGACTTGGTTGTTGTGAACCCAGTTTTGGTTATTGGACCATTGCTTCAAACTATCATTAATGCTAGTACAATTCACATCCTCAAGTACCTTACTGGTTCTGCTAAGACTTATGTAAATGCCACTCAGGCTTACGTACATGTCAGGGATGTGGCATTAGCCCACATTCTTGTTTATGAGACACCTTCAGCTTCTGGTCGATACATATGTGCAGAAAGTTCGCTGCATCGTGGTGAGCTAGTTGAAATTCTGGCCAAGTTTTTCCCCGAGTACCCAATTCCTACCAAATGTTCAGATGAAAAGAACCCGAGAGTAAAACCGtacatattttcaaatcaaaagctGAAAGATTTGGGATTCGAATTCACCCCCGTGAAGCAGTGCATATATGACACCGTTAAAAACCTGCAAGAGAGCGGCCACCTTCCTGTCCCCCCGAAGCAAGAAGACTCCTATTGA 999 0.4685 MPADTSSVSGETVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDPKNGHLKELEGARERLTLHKVDLFDIDSIKASIHGCHGVFHTASPVTDNPEEMVEPAVNGTKNVIIAAADAKVRRVVFTSSIGTVYMDPNTSRDGLVDESFWSDLEYCKNTKNWYCYGKTVAERAAWDIAKERGVDLVVVNPVLVIGPLLQTIINASTIHILKYLTGSAKTYVNATQAYVHVRDVALAHILVYETPSASGRYICAESSLHRGELVEILAKFFPEYPIPTKCSDEKNPRVKPYIFSNQKLKDLGFEFTPVKQCIYDTVKNLQESGHLPVPPKQEDSY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3494 332 Gene3D - 11 332 - -
Ssu4g3494 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 316 IPR036291 -
Ssu4g3494 332 CDD FR_SDR_e 13 300 - -
Ssu4g3494 332 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Ssu4g3494 332 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 325 - -
Ssu4g3494 332 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 7 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3494 Ssu-Chr4 85909121 85914579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3494 8 276 Monolignol Biosynthesis Gene Families AT1G80820 73.978 2.62e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3494 K09753 - gmx:100811528 635.95