LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g3492	atgatttttttcctcttcaggGAAGAAGCTGTTGTTGCAGCTGAGCCAGCTGCTACTATTCCAGGCGAGCCAATGGATATCATGACTGCCTTACAACTTGTCCTCAGAAAATCACTGGCTTATAGAGGTCTTGCACGAGGCCTTCATGAATCTGCAAAAGTGATCGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGACTGTGACCAACCTGACTATGTTAAACTCGTTAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCGAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATAGATTCTGAAGGGAAAGCTAGGAAGGTTACTGGCTGCTCCTGCGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAATCTCAATGA	435	0.4506	MIFFLFREEAVVAAEPAATIPGEPMDIMTALQLVLRKSLAYRGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ	144

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g3492	144	PRINTS	Ribosomal protein S12E family signature	34	47	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Ssu4g3492	144	PRINTS	Ribosomal protein S12E family signature	48	64	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Ssu4g3492	144	PRINTS	Ribosomal protein S12E family signature	89	110	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Ssu4g3492	144	PRINTS	Ribosomal protein S12E family signature	114	127	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Ssu4g3492	144	PANTHER	40S RIBOSOMAL PROTEIN S12	8	144	-	-
	Ssu4g3492	144	Gene3D	-	11	144	IPR029064	-
	Ssu4g3492	144	PANTHER	40S RIBOSOMAL PROTEIN S12	8	144	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Ssu4g3492	144	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	30	123	IPR004038	-
	Ssu4g3492	144	SUPERFAMILY	L30e-like	24	142	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g3492	Ssu-Chr4	85858915	85859604	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g3492	20	144	Cytoplasmic Ribosomal Protein Gene Family	AT2G32060	74.400	1.15e-65	194

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g3492	K02951		-	gmx:100305687	261.151