Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3489 ATGGACAAGGAGGAAGTCCCATCAGTACCTTCCACACCTGCAACACCAGGAACTCCCGGTGCTCCTCTTTTTGGTGGGCTcaagtttgagaaaaataatggtCTTGTTAGGAAATCGTCCTTCCTCAAAAGTTGCAAATGTTTCAGTGTTGAAGAATGGACCTTAGAAGATGGAGCCATGCCTAGAGTCTCTTGCTCTTTACCAGCCCCTCCTATCCCTCTCGCGAAAAAGGTTGGAGCTGAGTTTATTGGCACGTTCATTCTCATGTTTGCCGCGATAGGCACTGCTATTGTGAACCAAAATACACATGGCTCAGAGACTCTGGTTGGATGTGCTGCAGCTAATGGACTTGCTGTCATGATCATCATTTTCTCCACCGGCCACATCTCCGGGGCTCATCTCAACCCCGCTGTCACCATTTCCTTCGCTGCATTAAAACACTTCCCGTGGAAGAATGTGCCTGTGTATATTGGTACACAAGTTTTGGCATCAGTAAGTGCTGCATTTGCTCTGAAGGCGGTTTTTCATCCTTTCATGAGCGGCGGGGTGACGGTCCCTTCAATAGGATATGGCCAAGCTTTCGCCACAGAGTTCATTGTTAGCTTTATTCTTATGTTCGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGTGGGAGAGCTCGCGGGAATCGCGGTGGGAGCCACTGTCATGCTCAACAATCTCATAGCCGGGCCAGCAACTGGAAGTTCAATGAACCCGGTTAGAACACTGGGTCCTGCAATTGCTGCAAACAACTACAAGGGCATATGGGTGTATCTCATAGCTCCCATACTTGGAACTCTGTGTGGGGCAGGTGCCTACACTATGGTCAAGCTGCCTGACGAAGATTTTAACGCCCAGGCAAAGGCACCTTCTGCTCCTGCTGGGAGCTTCTGA 918 0.4902 MDKEEVPSVPSTPATPGTPGAPLFGGLKFEKNNGLVRKSSFLKSCKCFSVEEWTLEDGAMPRVSCSLPAPPIPLAKKVGAEFIGTFILMFAAIGTAIVNQNTHGSETLVGCAAANGLAVMIIIFSTGHISGAHLNPAVTISFAALKHFPWKNVPVYIGTQVLASVSAAFALKAVFHPFMSGGVTVPSIGYGQAFATEFIVSFILMFVVTAVATDTRAVGELAGIAVGATVMLNNLIAGPATGSSMNPVRTLGPAIAANNYKGIWVYLIAPILGTLCGAGAYTMVKLPDEDFNAQAKAPSAPAGSF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3489 305 PANTHER AQUAPORIN NIP2-1 3 295 IPR034294 -
Ssu4g3489 305 PANTHER BNAA02G36290D PROTEIN 3 295 - -
Ssu4g3489 305 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Ssu4g3489 305 SUPERFAMILY Aquaporin-like 73 293 IPR023271 -
Ssu4g3489 305 Pfam Major intrinsic protein 75 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3489 305 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3489 305 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3489 305 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3489 305 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3489 305 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3489 305 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3489 305 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g3489 305 Gene3D Glycerol uptake facilitator protein. 70 296 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3489 Ssu-Chr4 85813630 85818181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3489 1 290 Major Intrinsic Protein MIP AT1G80760 76.531 1.17e-159 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3489 K09874 - gmx:100798410 513.842