Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3487 ATGGATCTTCAAAGGCAAGAGCCTGGCCCTTCTGAAAAATTGAACATCATCACATTTTCAGAGACTTTGCCGTGCCAAAAACCTTCCATGGACACTCAAACAAAGAGGAATCACACAGAAAAGCAAGATCAAAAACACCCACATGACTCAGTTCCTGGTTTTTTACTAGATCTAAGTCTCTCAAGCCAGGATTCAGGTGATGACTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACAAATTTCTCTGAAAACTCCTCAGAATTCAGTCAGGGAAATGAACTGGATCCCAGAGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCCCAGGCACTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTGGCAAGAAGAGGATACAAAGCTGGTGCAGCAGATTTTGGACACACGTACTCCAACATGCCTTTTCTGCCTTCACATGGCTTATACAACAAAGCACTTGGAATTCAGGTTCATTCTATGATTAACAAACCTTCTTATCAAACACCCTTTTTTGGGTTGTGCCATTCCAATTGGTGGCAGAGGCAAACTTTGGATTCACAACCGGCAATTGGGAATTTTCGTGTGGGGGAAGAAACTGAGTCATCCTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAAGCTGTTGACAGAGGAATTTGGAGGTTACTGCTTTGGTAGCATTACTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTCAAGCTCTAA 774 0.4238 MDLQRQEPGPSEKLNIITFSETLPCQKPSMDTQTKRNHTEKQDQKHPHDSVPGFLLDLSLSSQDSGDDSKPELNLLNCFHTNFSENSSEFSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSNMPFLPSHGLYNKALGIQVHSMINKPSYQTPFFGLCHSNWWQRQTLDSQPAIGNFRVGEETESSLADSVPKLGKFSTKLLTEEFGGYCFGSITHLKSKQEKLQKLDLSLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3487 257 Gene3D Classic Zinc Finger 80 140 - -
Ssu4g3487 257 MobiDBLite consensus disorder prediction 1 69 - -
Ssu4g3487 257 SUPERFAMILY beta-beta-alpha zinc fingers 98 128 IPR036236 -
Ssu4g3487 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 37 257 IPR044246 GO:0009788
Ssu4g3487 257 MobiDBLite consensus disorder prediction 11 32 - -
Ssu4g3487 257 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 37 257 - -
Ssu4g3487 257 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Ssu4g3487 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Ssu4g3487 257 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3487 Ssu-Chr4 85779846 85780619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3487 1 257 C2H2 Transcription Factor Family AT5G10970 39.209 2.68e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g3487 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3487 - - gmx:102666245 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3487 4 85779846 85780619 Ssu4g3487 4 85779846 85780619 ECH