Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3480 ATGGAAAACCTCGAAAAACTCAAGAATGAGAACATCGATCTCGAAAGTAAGGTGCTGAAATTCTTGGGGTTTATGTGGAATCCTCTGTCATGGGTCATGGAAGCGGCTGCTATCATGGCAATTGCATTGGCAAATGGAGGGGGCAAGCCACCAGATTGGCAGGATTTTGTGGGAATACTGGCATTGCTTGTTATCAACTCCACCATTAGTTTTATAGAAGAAAACAATGCAGGCAATGCTGCTGCAGCACTTATGGCTGGTCTTGCTCCCAAAACCAAGGTTCTAAGAGACGGAAAGTGGACCGAGGAGGAAGCTGCCATATTGGTACCAGGAGATATTATCAGCATCAAGTTAGGAGACATAGTCCCGGCTGATGCTCGTCTCTTGGATGGAGATCCACTCAAGATTGATCAATCTGCACTTACTGGTGAATCATTGCCTGTTTCAAAGAATCCAGGTGATGAAGTCTTCTCCGGGTCTACAGTTAAGCAAGGAGAGCTTGAGGCTGTTGTAATCGCTACTGGGGTACACACCTTCTTTGGTAAGGCTGCTCACTTGGTGGACAGCACCAACCAAGAAGGGCATTTTCAGAAGGTGTTGACAGCCATTGGTAACTTTTGCATTTGCTCAATAGCTGTGGGTATGGTCATAGAGATCATTGTCATGTACCCAATTCAGCACCGACCCTATAGGAGTGGAATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCTATTGCCATGCCAACGGTTTTGTCAGTGACGATGGCTATTGGTTCCCATCGGCTGTCCCAACAAGGTGCCATCACGAAGAGGATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTTTATGCAGTGACAAGACTGGCACTCTGACGCTGAACAAGCTCACTGTAGACAAGAGTTTGATTGAGGTTTTCGGAAAAGATGCTGACAAGGACACTGTAATTTTGCTTGGAGCTAGGGCGTCTAGGGTAGAGAACCAAGATGCTATCGATGCTTGCATTGTTGGAATGTTGGGTGACCCAAGGGAGGCCAGAGATGGCATCACAGAGGTGCATTTCTTACCCTTTAATCCAGTGGACAAGCGTACGGCAATAACATACATAGACAACATGGGCAATTGGCACCGAGTAAGCAAAGGGGCACCAGAGCAGCTCATAGTGAATTTCTTGCCAGATTATAGCTCTCTGCAATCTCCGGGAAGATGTAAAGAGAAAGCTCATGCCATTATCGGAAAATTTGCTGATCGGGGTCTCCGTTCCCTTGCTGTTGCCAAGCAAGAAGTTCCAGAGAAGACCAAGGATAGTCCAGGAGGACCATGGCAGTTTGTGGGTATCTTGCCTCTCTTTGACCCACCTAGGCATGACAGTGCAGAGACCATTCGCCGTGCTCTCCATCTTGGAGTGAACGTTAAGATGATTACTGGCGACCAGCTAGCTATTGGAAAGGAGACCGCTCGCAGGCTTGGCATGGGAAGTAACATGTACCCTTCTTCCTCCCTTCTTGGCGAGCGCAAGGATGAGTCTATTGCTGCGCTTCCAGTTGATGAGCTTATTGAGCAGGCTGATGGCTTTGCTGGTGTCTTTCCTGAGCACAAATACGAGATTGTGAAGATACTCCAGGATAGAAAACACATATGTGGGATGACTGGAGATGGTGTCAATGATGCTCCTGCCCTCAAAAAGGCAGATATTGGGATTGCAGTGGCTGATGCAACCGATGCAGCTCGAGGTGCATCCGACATAGTCCTGACAGAGCCTGGTCTGAGTGTGATTGTGAGTGCAGTTTTGACAAGCAGAGCCATTTTCCAGCGAATGAAGAACTACACCATCTATGCTGTTTCTATTACAATCCGAATCGTGATGGGTTTTATGCTGCTAGCTCTTATCTGGAAATTTGATTTCTCACCTTTTATGGTTTTGATTATTGCAATACTAAATGACGGAACAATTATGACCATTTCCAAGGACAGAGTGAAGCCATCTCCTCTGCCAGATTCATGGAAGTTGAATGAGATTTTTGCCACAGGCATAGTGCTTGGTGCCTACCTTGCTATCATGACTGTTGTCTTCTTCTGGGCTGCTCATGCTTCTGATTTCTTCTCGGAAAAATTTGGCGTCAGATCTATCAGGTATAACGAGGATGAGCTCACAGCGGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAGGCTCTCATCTTTGTTACTCGGTCAAGGAGCTGGTCTTTTGTTGAGCGCCCTGGCCTCTTGCTTGTTACAGCCTTTGTACTAGCACAGCTGATTGCCACAATCATAGCTGTGTATGCAAAATGGGGCTTTGCAAGGATGGAAGGAATTGGGTGGGGCTGGGCTGGGGTCATTTGGCTCTACAGCATCATTTTCTACATCCCATTGGATTTTCTTAAATTCGCCATTCGATATTTTTTGAGTGGCAGGGCATGGAATAATATTACTGAGAACAAGACTGCTTTCACTACAAAGAAGGATTATGGAAAGGAAGAGCGAGAAGCACAATGGGCTACAGCTCAACGCACGCTACATGGGTTGAATCCTCCTGAAACAGAACAAATATTTAGCGAAAAGAACAACTACCGCGAATTGTCTGAAATCGCAGATCAGGCTAGGAAACGGGCTGAAGTTGCTAGGTTGAGGGAGCTTCACACATTGAAGGGACATGTCGAGTCCGTTGTGAAACTCAAGGGACTGGACATTGATACAATTCAGCAGCATTACACTGTTTGA 2751 0.4653 MENLEKLKNENIDLESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGILALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEEEAAILVPGDIISIKLGDIVPADARLLDGDPLKIDQSALTGESLPVSKNPGDEVFSGSTVKQGELEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNFCICSIAVGMVIEIIVMYPIQHRPYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFGKDADKDTVILLGARASRVENQDAIDACIVGMLGDPREARDGITEVHFLPFNPVDKRTAITYIDNMGNWHRVSKGAPEQLIVNFLPDYSSLQSPGRCKEKAHAIIGKFADRGLRSLAVAKQEVPEKTKDSPGGPWQFVGILPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETARRLGMGSNMYPSSSLLGERKDESIAALPVDELIEQADGFAGVFPEHKYEIVKILQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVMGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGAYLAIMTVVFFWAAHASDFFSEKFGVRSIRYNEDELTAAVYLQVSIVSQALIFVTRSRSWSFVERPGLLLVTAFVLAQLIATIIAVYAKWGFARMEGIGWGWAGVIWLYSIIFYIPLDFLKFAIRYFLSGRAWNNITENKTAFTTKKDYGKEEREAQWATAQRTLHGLNPPETEQIFSEKNNYRELSEIADQARKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3480 916 Gene3D - 52 780 - -
Ssu4g3480 916 SUPERFAMILY HAD-like 283 600 IPR036412 -
Ssu4g3480 916 Gene3D - 299 453 IPR023299 GO:0000166
Ssu4g3480 916 ProSitePatterns E1-E2 ATPases phosphorylation site. 289 295 IPR018303 -
Ssu4g3480 916 Gene3D - 284 590 IPR023214 -
Ssu4g3480 916 SUPERFAMILY Calcium ATPase, transduction domain A 90 187 IPR008250 -
Ssu4g3480 916 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 13 887 - -
Ssu4g3480 916 PANTHER CALCIUM-TRANSPORTING ATPASE 13 887 - -
Ssu4g3480 916 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 528 638 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3480 916 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 59 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3480 916 Gene3D - 90 174 - -
Ssu4g3480 916 Coils Coil 867 887 - -
Ssu4g3480 916 SFLD C1.7: P-type atpase like 269 605 - -
Ssu4g3480 916 Gene3D - 865 916 - -
Ssu4g3480 916 Pfam haloacid dehalogenase-like hydrolase 283 567 - -
Ssu4g3480 916 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 15 771 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu4g3480 916 PRINTS P-type cation-transporting ATPase superfamily signature 137 151 - -
Ssu4g3480 916 PRINTS P-type cation-transporting ATPase superfamily signature 448 459 - -
Ssu4g3480 916 PRINTS P-type cation-transporting ATPase superfamily signature 553 572 - -
Ssu4g3480 916 PRINTS P-type cation-transporting ATPase superfamily signature 470 480 - -
Ssu4g3480 916 PRINTS P-type cation-transporting ATPase superfamily signature 287 301 - -
Ssu4g3480 916 PRINTS P-type cation-transporting ATPase superfamily signature 576 588 - -
Ssu4g3480 916 SFLD p-type atpase 269 605 IPR044492 -
Ssu4g3480 916 Pfam E1-E2 ATPase 89 266 - -
Ssu4g3480 916 PRINTS H+-transporting ATPase (proton pump) signature 725 746 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3480 916 PRINTS H+-transporting ATPase (proton pump) signature 410 428 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3480 916 PRINTS H+-transporting ATPase (proton pump) signature 525 541 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3480 916 PRINTS H+-transporting ATPase (proton pump) signature 553 569 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3480 916 PRINTS H+-transporting ATPase (proton pump) signature 584 609 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g3480 916 CDD P-type_ATPase_H 15 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu4g3480 916 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 813 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3480 Ssu-Chr4 85690484 85696549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3480 15 916 Primary Pumps ATPases AT3G42640 83.038 0.0 1517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3480 K01535 - gmx:100796279 1630.54