Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3476 ATGGCAGCTTCCACAGCAAAGAAGGTGTGCGTAACTGGTACTCAGAAATATGAACACTTACTCAAACTCGACAGAGCTTCTGAAAACCTTACACTCTTCAAGGCAGATCTCTTGAATTACGAATCTGTTCGCTCAGCAATTCTTGGATGCACTGCAGTTTTCCACGTTGCTTGCCCTGTACCCTCAACAATTGTACCCAACCCTGAGGCAACCATCTACTTCTACaacttccaattatttttttccccttttttaGTAGAAGTGATTGAGCCTGCTGTGAAAGGAACTGCTAATGTACTTGAAGCTTGCCTTGAAGCTAAGGTGCAACGAGTTGTCTTTGTATCATCTGTATCTGCTATTTGCATGAACCCGAATTTGCCAAATGATAAAGTGATTGATGAGTCCTATTGGTCTGATAAAGATTACTGCAGAAGAACTCAGAACTGGTACTGTTTTTCTAAGACACAGGCAGAGGAGCAAGCCATGGACTTTGCGAAAAGAACTGGGCTTGATGTGGTAAGCATTTGTCCTTCCCTTGTGTTGGGGCCAATTTTACAGTCAACCACTGTTAATGCAAGTAGCTTGGTTCTCCCCAAACTTTTAAAAGGTCATGACTCAATGGAGAATAAGCTTCGTTGGATAGTCGATGTACGAGATCTAGTCGATGCAATACTTTTGGCTTATGAGAAGCTTGAGGCAGAAGGGAGATACCTATGCAATTCACATACCATCAAGACACGGGATTTGGTGGAGAAACTAAGGAGTATATTTCCCAGCTACAAGTACCCTGCGAACTTTATCGAGGTGGATGATTACATAAGGCTCGGCTCAGAGAAACTGCAAAGGTTGGGTTGGAAATACAGGCCGCTAGAGGAAACACTCATTGATTCTGTTGAGAGCTATCGGGAGGCTGGGCTCGTGCTATCAGAATAA 933 0.4255 MAASTAKKVCVTGTQKYEHLLKLDRASENLTLFKADLLNYESVRSAILGCTAVFHVACPVPSTIVPNPEATIYFYNFQLFFSPFLVEVIEPAVKGTANVLEACLEAKVQRVVFVSSVSAICMNPNLPNDKVIDESYWSDKDYCRRTQNWYCFSKTQAEEQAMDFAKRTGLDVVSICPSLVLGPILQSTTVNASSLVLPKLLKGHDSMENKLRWIVDVRDLVDAILLAYEKLEAEGRYLCNSHTIKTRDLVEKLRSIFPSYKYPANFIEVDDYIRLGSEKLQRLGWKYRPLEETLIDSVESYREAGLVLSE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3476 310 Gene3D - 3 310 - -
Ssu4g3476 310 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 12 234 IPR002225 GO:0003854|GO:0006694|GO:0016616
Ssu4g3476 310 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 307 - -
Ssu4g3476 310 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 303 IPR036291 -
Ssu4g3476 310 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 12 307 - -
Ssu4g3476 310 CDD FR_SDR_e 16 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3476 Ssu-Chr4 85662924 85667185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3476 14 307 Monolignol Biosynthesis Gene Families AT2G33590 57.288 6.45e-121 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3476 - - gmx:100784817 466.463