Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3474 ATGAACGGCGAAATTTGCTTACACGTGGCCGcaaccaccgccaccactaaCTTTTTGCTTCCGAAACCCGAAACGGCGTCGTCCGAGTCGCTGGACCCATCGCAAAAGCTACGCTACGAAACGGCGCTCGAAGGAATAGCCGCGGTGGTTGGAGAACGCGTCCTCTTCGGAGCCGCCCACCACGGAACGACGTCGTCGCATGTTTCGGAGACACCGAAGAAGACAGGTGGCGCGTCGGTGAGCAAGAGCTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAGGTGGTCGGCGGAGATACGAGACCGGATCGGCCGGTGCCGCCACTGGCTGGGGACCTTCGATACGGCGGAGGAGGCGGCGCGTGCGTACGACGCGGCGGCGAGGCGGTTGAGAGGCGCGAAGGCTCGGACCAACTTCAAGATACCGTCGGTGCTGCCACTGTCGCCGTCTTCGGAAGGGGTGGGTGGTGGGGCCGTGAAGCCGAAAACCACGCGCAATAACGCCAGGAAGTGTTCCTCTGTGGAACAATTGTTCAGTGGGGTGCCTCAAGTTCGAAGAGATAATGTTGGTGGCCATGGTGAGAATGGGAATGTGGAAGTGGACTTGAAACTGGGTGTGAACTTTGGCGTTACGAGCGCTAGAATGGTGGTGTAG 654 0.5841 MNGEICLHVAATTATTNFLLPKPETASSESLDPSQKLRYETALEGIAAVVGERVLFGAAHHGTTSSHVSETPKKTGGASVSKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPSSEGVGGGAVKPKTTRNNARKCSSVEQLFSGVPQVRRDNVGGHGENGNVEVDLKLGVNFGVTSARMVV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3474 217 MobiDBLite consensus disorder prediction 61 85 - -
Ssu4g3474 217 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Ssu4g3474 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 35 189 - -
Ssu4g3474 217 MobiDBLite consensus disorder prediction 150 170 - -
Ssu4g3474 217 Gene3D AP2/ERF domain 82 141 IPR036955 GO:0003700|GO:0006355
Ssu4g3474 217 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Ssu4g3474 217 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Ssu4g3474 217 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Ssu4g3474 217 MobiDBLite consensus disorder prediction 62 78 - -
Ssu4g3474 217 SUPERFAMILY DNA-binding domain 83 140 IPR016177 GO:0003677
Ssu4g3474 217 CDD AP2 82 141 IPR001471 GO:0003700|GO:0006355
Ssu4g3474 217 Coils Coil 116 136 - -
Ssu4g3474 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 189 - -
Ssu4g3474 217 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3474 Ssu-Chr4 85605737 85606390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3474 5 146 AP2-EREBP Transcription Factor Family AT1G80580 51.899 6.61e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g3474 AP2 2.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3474 4 85605737 85606390 Ssu4g3474 4 85605737 85606390 ECH