Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3473 ATGGGGGAGCCATGCCAAAAATATTGGTTCTCTGATATGGAAATACAATACGATGATTTCTTTAACCAAAGCCACAAGATTGACTCACTGGATGATGATCAGATCTTTCGAGAGATCATGCATCAGCCAGCTTTTTCTTCTGACAGCGAAACTCACTCTcccaataatcaaaataaattaatccacGGTAGCAATGGTTGTACAACCCTCGCCAACGACAAGAGTAGCAACCTTGTGATCAAGAGCAACAGCTCCAACTTCATCTTCTCACAGCATGCACCAGAGAAACCTGCCACAGCCACTTCCCCACCCGCATTCATTCTGTCTTTCGATGACTCCACCGTAGTAGCAGCTACCCGTGGAAAACTGCCCTACCACGAGGAAGTAGTAGTAGGGAGTGGTGGCGCATGTCTTCCCTCAAAAGGGGTCTCAGAAAAACATGAAATTGAACCTAAGGCCAACCCAACAACAAAGAAAGGTAGAAGCTCTGCGCAGACACTAGACCATATAATGACAGAGAGAAAAAGGAGGCGGGAACTGACAGAGAGATTCATTGCACTTTCAGCCATCATACCTGGCTTGAAGAAGATTGACAAGGCCACTATACTTAGCGAAGCAATCACTCATGTGAAACGACTTAAAGAACGTGTGAGAGAGCTAGAAGAACAATGTAAGCAGACAAGGGTAGAGTCAGTGTCATTCATTCATCAGAGATCCCACATTTCAACTGACAAAGGCACCACCTCTGGTGCAATGAGCTCTGATGACTGCTATAGAACCAATGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAAGATGTACTCCTCCGTATTCACTGCAAGATACAAAGTggcattttgctcaaaattttggACCATCTTAATAGTCTCGATCTCTCCACAATCAGCAACAGTGTAATGCCATTTGGGAGTTCCACTCTTGACATCAGCATTATTGCTCAGATGGGTGACGAATTCAACATAACAATGCATGATCTAGTGAAAAACCTGAGACTGGCTCTCTTGCAGTCATCTGAAGTACAACAGTGA 1056 0.4271 MGEPCQKYWFSDMEIQYDDFFNQSHKIDSLDDDQIFREIMHQPAFSSDSETHSPNNQNKLIHGSNGCTTLANDKSSNLVIKSNSSNFIFSQHAPEKPATATSPPAFILSFDDSTVVAATRGKLPYHEEVVVGSGGACLPSKGVSEKHEIEPKANPTTKKGRSSAQTLDHIMTERKRRRELTERFIALSAIIPGLKKIDKATILSEAITHVKRLKERVRELEEQCKQTRVESVSFIHQRSHISTDKGTTSGAMSSDDCYRTNEALPTVEARVFKKDVLLRIHCKIQSGILLKILDHLNSLDLSTISNSVMPFGSSTLDISIIAQMGDEFNITMHDLVKNLRLALLQSSEVQQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3473 351 MobiDBLite consensus disorder prediction 141 166 - -
Ssu4g3473 351 SMART finulus 170 219 IPR011598 GO:0046983
Ssu4g3473 351 Pfam Helix-loop-helix DNA-binding domain 169 213 IPR011598 GO:0046983
Ssu4g3473 351 PANTHER TRANSCRIPTION FACTOR NAI1 8 345 - -
Ssu4g3473 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Ssu4g3473 351 Coils Coil 203 230 - -
Ssu4g3473 351 PANTHER BHLH TRANSCRIPTION FACTOR 8 345 - -
Ssu4g3473 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 241 IPR036638 GO:0046983
Ssu4g3473 351 Gene3D - 155 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3473 Ssu-Chr4 85578634 85580508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3473 152 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.792 1.85e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g3473 HLH 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3473 - - gmx:100777846 532.332