Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3472 ATGGAGGAGTCATGGGAGAATTGGCATCTTCATATGGAAATGGATTGCGAGAACGATTTCTTAGGCAAGTGTCACGGTGCGGACGATGACGAGTTCCTGAGAGACATCTTTCAGCGATCACCGGCAGCTTTCTCTTCCGAAAGCGAAAGCGATCACTCATTCCATGCCTCGTCCACTTTCCAAAACAATTCCATCCCCACCGCCGCAGACGGCGCCGTTTTGTCACCTAGGAACCTGGTCAAAAGCAACAGCTCCAACTCCACAGTGTCCCAAAACGGTTCCAAAAGGCCCCGTCGTTTGTCTTCTCCCAGGACATACATTCTTTCCTTCGATAACTCAACCATGATCCCGGCCACACCCGAACCGTGCCCTCGTTCTTGCAACAATTCCCCTTTACCTGCAAAACGGGCGCTGGAAAGTCCAGGCCCAGAACCGACAACAAGGCCCAGTCAAGAAGCTAAGAAGGTCAGAACCTCTTCTCAGACCATTGATCACATAATGGCGGAGAGAAGAAGGAGACAGGAACTGACAGAGAGGTTCATAGCACTCTCAGCCACGATTCCCGGCTTGAACAAGACGGACAAGGCTTCTGTACTTCGAGCAGCAATCGATTACGTGAAACAACTTCAAGAACGCGTACAGGAACTAGaacaagaagacaaaaaaaggaGGGTAGAGTCAGTAATATTCCTCAAGAACCCCGATCCAAACGGAAATGAAGACACCACCTCCACTGAAACCAACTGTAGCATCCTTCCCGAGATGGAAGCAAGAGTGTTGGGGAAGGAGGTGCTCATTGAGATCCACTGTGAGAAAGAAAATGGTATTGAGCTAAAAATATTGGACCACATTGAAAATCTTCATCTCAAAGTCACCGGTAGCAGTGTCTTGCCATTTGGGAATTCAGCTCTCTGCATTACCATCACAGCTCAGATGGGTGACGCGTACCAAATGGCAGTGAATGATCTAGTGAAAGACCTTAGACAAGTGCTCTCAAAGTCACATGTGCTCTGCGACAGTGATCCGTACTAG 1032 0.4816 MEESWENWHLHMEMDCENDFLGKCHGADDDEFLRDIFQRSPAAFSSESESDHSFHASSTFQNNSIPTAADGAVLSPRNLVKSNSSNSTVSQNGSKRPRRLSSPRTYILSFDNSTMIPATPEPCPRSCNNSPLPAKRALESPGPEPTTRPSQEAKKVRTSSQTIDHIMAERRRRQELTERFIALSATIPGLNKTDKASVLRAAIDYVKQLQERVQELEQEDKKRRVESVIFLKNPDPNGNEDTTSTETNCSILPEMEARVLGKEVLIEIHCEKENGIELKILDHIENLHLKVTGSSVLPFGNSALCITITAQMGDAYQMAVNDLVKDLRQVLSKSHVLCDSDPY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3472 343 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 337 - -
Ssu4g3472 343 MobiDBLite consensus disorder prediction 77 116 - -
Ssu4g3472 343 PANTHER BHLH TRANSCRIPTION FACTOR 1 337 - -
Ssu4g3472 343 Gene3D - 158 229 IPR036638 GO:0046983
Ssu4g3472 343 Coils Coil 199 226 - -
Ssu4g3472 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 227 IPR036638 GO:0046983
Ssu4g3472 343 MobiDBLite consensus disorder prediction 44 163 - -
Ssu4g3472 343 MobiDBLite consensus disorder prediction 144 163 - -
Ssu4g3472 343 Pfam Helix-loop-helix DNA-binding domain 165 210 IPR011598 GO:0046983
Ssu4g3472 343 SMART finulus 166 215 IPR011598 GO:0046983
Ssu4g3472 343 MobiDBLite consensus disorder prediction 44 69 - -
Ssu4g3472 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3472 Ssu-Chr4 85567552 85571511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3472 66 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.544 2.70e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g3472 HLH 7.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3472 - - gmx:100778376 549.28