Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3471 ATGAATGACGATCCTGCTTCCACCAATGACGCCGTGAGCAGTTCATCCTTTGAAGAGATGGTAAGGTTCAACAATGGGCAGTATTATGGTAGCTCCAATGCTGTAGCAGCAATAGGGGTTAAACAGGAATACTGTAACTCTTATTTGAAGAGCAGCCAAGAGGAATTGGGAAGTTGTTATTCGCGTAAAAGTGGTCAAGGGAGCCATGAGTTGGAGGCAAGGGAGAAGAACACTAGGGGAACAAAAAGGGCAAGAACCTCTTCTGAGACACAATACCACATAATGTCAGAGAGAAAAAGGAGACAGGATATAGCGGAGAAATTCATAGCACTCTCGGCTACTATACCTGGCTTGAGGAAGaTAGACAAGGCCTCCGTACTTCGTGAAGCCATCAACTACGTGGGACAATTTCAACAACGCATAGCAGTGCTGGAAAAAGCgactaataataaaagtataaagcCATTGATCATCTCGAAAGCACGCCTTTGTTCGGCGTCATGTGAAACAATACAATCTAATGATTATTATAGAGCCAATGAAGTGCACCCTGAAGTTGAAGCAAGAGGTTTAGAGAAGGAAGTACTCATTAGAATCTATTGTGAGAGACGAAAGGGCATCATGCTTAAGCTATTGGCCCTACTTAAAGATGTTCATCTCTCAATAGCCAGTGGCAGCGTATTGCCATTGGGAAACTCTATTCTCAACATTATCATAATTGCTCAGATGAGTGAGAAATACAACTTGACGGTGAACGATTTGGTTAAGACCTTGAAGCGGGATCTTTTGAATTTGTATGAGATGTAA 807 0.4164 MNDDPASTNDAVSSSSFEEMVRFNNGQYYGSSNAVAAIGVKQEYCNSYLKSSQEELGSCYSRKSGQGSHELEAREKNTRGTKRARTSSETQYHIMSERKRRQDIAEKFIALSATIPGLRKIDKASVLREAINYVGQFQQRIAVLEKATNNKSIKPLIISKARLCSASCETIQSNDYYRANEVHPEVEARGLEKEVLIRIYCERRKGIMLKLLALLKDVHLSIASGSVLPLGNSILNIIIIAQMSEKYNLTVNDLVKTLKRDLLNLYEM 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3471 268 SMART finulus 94 143 IPR011598 GO:0046983
Ssu4g3471 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 150 IPR036638 GO:0046983
Ssu4g3471 268 MobiDBLite consensus disorder prediction 59 93 - -
Ssu4g3471 268 Gene3D - 86 156 IPR036638 GO:0046983
Ssu4g3471 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 137 IPR011598 GO:0046983
Ssu4g3471 268 MobiDBLite consensus disorder prediction 67 83 - -
Ssu4g3471 268 Pfam Helix-loop-helix DNA-binding domain 92 137 IPR011598 GO:0046983
Ssu4g3471 268 PANTHER BHLH TRANSCRIPTION FACTOR 33 268 - -
Ssu4g3471 268 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 33 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3471 Ssu-Chr4 85541671 85545021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3471 29 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.661 2.82e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g3471 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3471 - - gmx:100778916 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0074 8 1196004 1197693 Ssu4g3471 4 85541671 85545021 PCT