Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3470 ATGGAGGAGTCAGGGGAAAATTGGCCTTCTGATTCTTATTTGGAAGTGGGTGATGACGTCAACGATTTGTGTTTTGATGATGAAGAATTTGCTGAAGACGATAAGGGAGACTCTTTTTCTGAGACCGTGGATCGCATGATGGGCGAGACCGACAGAAAGCAGAGACAGGGGGAACTCACAGAGAGGTTCCTTGCACTTTCAGCTACCATACCTGGCTTGAAAAAGATGGACAAGACTTCCATCCTGGACAATGCTAGCAACTATGTGAAACAACTTCAGCAACGTGTGAGAGAGCTAGAGCAAGAAGTTCAATCCAACACTTGTAGCGATAAAGGCGCCACCGGCTCCTCCGAAGTGAATTCTAATGACCATTGCTGTGGAACAAATGAATTTCTTCCCGAGGTCAAAGTAAGAGTGTTACAGAAGGACGTACTCATCATAATCCACTGTGAGAAACAGAACGGCGATATCATGCTCAAAATACTATCCAACCTTGAAAATATTCATCTCTCTGTAGTCAACAGCAGCGTCTTGCGATTTGGGAAATCCACTCTAGACATCACCATTACTGCTCAGATGGGTGATGGATACAACATGACAGTGGATGAACTGGTGAAGACCATGCGAGTAGCGATCTTGACTCAGTAG 648 0.4506 MEESGENWPSDSYLEVGDDVNDLCFDDEEFAEDDKGDSFSETVDRMMGETDRKQRQGELTERFLALSATIPGLKKMDKTSILDNASNYVKQLQQRVRELEQEVQSNTCSDKGATGSSEVNSNDHCCGTNEFLPEVKVRVLQKDVLIIIHCEKQNGDIMLKILSNLENIHLSVVNSSVLRFGKSTLDITITAQMGDGYNMTVDELVKTMRVAILTQ 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3470 215 Gene3D - 48 107 IPR036638 GO:0046983
Ssu4g3470 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Ssu4g3470 215 SMART finulus 50 98 IPR011598 GO:0046983
Ssu4g3470 215 Coils Coil 82 109 - -
Ssu4g3470 215 PANTHER BHLH TRANSCRIPTION FACTOR 49 215 - -
Ssu4g3470 215 PANTHER PROTEIN, PUTATIVE-RELATED 49 215 - -
Ssu4g3470 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 106 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3470 Ssu-Chr4 85511768 85521617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3470 40 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.659 6.76e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g3470 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3470 - - gmx:100527052 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3470 4 85511768 85521617 Ssu8g0075 8 1238162 1241543 PCT