Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3449 ATGGCAACGGCAACATACCCTCCACCGCCACCTTATTACAGACTTTACAAAGATTACTTGCAAGACCCCAAGTCTGTTCCTGAGCCTCCACCGCCTATTGAAGGGACTTACGTTTGTTTTGGAGGCAATTACACTACTAGCAATGTTCTACCAAGCTTGGAAGAGCAAGGGGTGCGCCAGCTCTATTCTAAGGGGCCTAATGTTGATTTCAAGAAGGTGCTGAGGTCACTTAATGGAGAGTTGCAACTACACGTCTTGGAGCTTGCTGATATTCTTATTGAGAGACCTTCACAGTATGCGAGGAGAgttgaagaaatttcaactgTATTAAAAAACTTACATCACCTTTTAAATTCATTGCGTCCTCATCAGGCTAGAGCAACATTGATTCACATTTTGGAACTTCAGATACAGCGCCGTAAACAAGCAGTGGAGGACATAAAgagGAGGAGAGACGAAGCACGAAGGCTCCTTAACGAGTCCTTGGCAACACTTGATGGCCATTAG 507 0.432 MATATYPPPPPYYRLYKDYLQDPKSVPEPPPPIEGTYVCFGGNYTTSNVLPSLEEQGVRQLYSKGPNVDFKKVLRSLNGELQLHVLELADILIERPSQYARRVEEISTVLKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRRDEARRLLNESLATLDGH 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3449 168 Coils Coil 130 164 - -
Ssu4g3449 168 Gene3D - 60 159 IPR044888 -
Ssu4g3449 168 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 168 IPR009244 GO:0003712|GO:0006357|GO:0016592
Ssu4g3449 168 Pfam MED7 protein 4 158 IPR009244 GO:0003712|GO:0006357|GO:0016592
Ssu4g3449 168 SUPERFAMILY Mediator hinge subcomplex-like 67 159 IPR037212 GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3449 Ssu-Chr4 85129391 85133404 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Ssu4g3449 Med7 3.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3449 K15148 - gmx:100792250 303.908