Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3448 ATGGCGATGATTCTGTCCCTCTCTCCTCTTCCCTCTTCCTTCTGTGGCAGTGGCGCGATCCACCTTCGTTCTCACAACAACCTCGCTTCTCCTCTCTCTTCCAACGGCAGCCGGCGCTTTGCGACGGTGGTTGCTGCAGCTTCCGGCGACTACTACGCCACTCTCGGAGTCTCCAAATCTGCCTCCGCCAAGGAAATCAAAGCTGCGTATCGAAGACTAGCTCGCCAGTATCATCCTGATGTGAACAAGGAACCTGGAGCCACTGAAAAGTTCAAACAGATTAGTTCTGCTTATGAGGTGCTATCAGATCATAAAAAGAGGGCTCTCTATGATCAATATGGCGAGGCTGGAACTGTAGGGGGAGCATCAGCTGCCTATGCGACTAATCCATTTGACTTATTTGAGACATTTTTTGGGTCAAGTATGGGTGGTTTCCCTGGCATGGGTCCAACTGAATTTGGAACACAGGAACGACATACTACTGTTAATAAGGGTCAAGACATTCGTTATGATATCTCCTTGGATTTTTCTGAGGCAATTTTCGGAACAGAGAGAGAATTTGAGCTTTTTCATATGGAAACCTGCAAAGTTTGTAGTGGTACCGGAGCAAAGATAGGCTCCAAGATGAGAATATGTTCAACATGTGGTGGGAGGGGTCAGGTGAGGAGGACTGAACAAACACCTTTTGGGTTGTTCTCACGGgttTCATTGTGTCCAAACTGCGGAGGGGATGGTGAAGTCATATCTGAATATTGCACTAATTGCAGAGGTGAAGAACGAATACGGGTTAAGAaaaactttaaagttaaagttccACCTGGGGTTAGCTCAGGCAGTATACTGCGAGTTGCAGGAGAGGGTGATGCTGGACCAAGAGGGGGTCCTCCTGGGGATCTTTATGTTTATCTTGATGTGGAGGAGATACCAGGAATCCAAAGAGATGGCATTAATCTCTGCTCTACAATATCAATCAGTTATCTATATGCCATACTAGGGGCAGTTGTCAAGGTGAAGACGGTTGAAGGCATTTCTGAACTTCAAATACCTCCTGGTACCCAACCTGGAGATGTCCTTGTCCTAGCAAGGAAAGGTGCAccaaaattaaacaaaccaTCAATTCGTGGTGACCACTTGTTTACTGTTAAAGTTACAATACCAAAACGTATCAGTACAATGGAACGTGAGTTGCTTGAAGAACTTTCTTTGCTACGCAGCCGTTCAAAATCTCATCCTGGAATCCACTCTTCTAGTCGGTGA 1257 0.4511 MAMILSLSPLPSSFCGSGAIHLRSHNNLASPLSSNGSRRFATVVAAASGDYYATLGVSKSASAKEIKAAYRRLARQYHPDVNKEPGATEKFKQISSAYEVLSDHKKRALYDQYGEAGTVGGASAAYATNPFDLFETFFGSSMGGFPGMGPTEFGTQERHTTVNKGQDIRYDISLDFSEAIFGTEREFELFHMETCKVCSGTGAKIGSKMRICSTCGGRGQVRRTEQTPFGLFSRVSLCPNCGGDGEVISEYCTNCRGEERIRVKKNFKVKVPPGVSSGSILRVAGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGINLCSTISISYLYAILGAVVKVKTVEGISELQIPPGTQPGDVLVLARKGAPKLNKPSIRGDHLFTVKVTIPKRISTMERELLEELSLLRSRSKSHPGIHSSSR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3448 418 Pfam DnaJ domain 50 111 IPR001623 -
Ssu4g3448 418 ProSiteProfiles Zinc finger CR-type profile. 182 264 IPR001305 GO:0031072|GO:0051082
Ssu4g3448 418 Pfam DnaJ central domain 195 258 IPR001305 GO:0031072|GO:0051082
Ssu4g3448 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 315 IPR008971 GO:0006457|GO:0051082
Ssu4g3448 418 SUPERFAMILY HSP40/DnaJ peptide-binding domain 312 397 IPR008971 GO:0006457|GO:0051082
Ssu4g3448 418 ProSitePatterns Nt-dnaJ domain signature. 91 110 IPR018253 -
Ssu4g3448 418 CDD DnaJ_zf 195 258 IPR001305 GO:0031072|GO:0051082
Ssu4g3448 418 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 182 261 IPR036410 -
Ssu4g3448 418 CDD DnaJ_C 166 389 - -
Ssu4g3448 418 SMART dnaj_3 49 106 IPR001623 -
Ssu4g3448 418 Pfam DnaJ C terminal domain 168 386 IPR002939 -
Ssu4g3448 418 TIGRFAM DnaJ_bact: chaperone protein DnaJ 50 401 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Ssu4g3448 418 Hamap Chaperone protein DnaJ [dnaJ]. 47 410 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Ssu4g3448 418 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 37 409 - -
Ssu4g3448 418 CDD DnaJ 50 103 IPR001623 -
Ssu4g3448 418 Gene3D DnaJ domain 47 147 IPR036869 -
Ssu4g3448 418 Gene3D - 165 301 - -
Ssu4g3448 418 Gene3D - 195 259 - -
Ssu4g3448 418 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 37 409 - -
Ssu4g3448 418 SUPERFAMILY Chaperone J-domain 47 151 IPR036869 -
Ssu4g3448 418 PRINTS DnaJ domain signature 106 125 IPR001623 -
Ssu4g3448 418 PRINTS DnaJ domain signature 86 106 IPR001623 -
Ssu4g3448 418 PRINTS DnaJ domain signature 52 70 IPR001623 -
Ssu4g3448 418 PRINTS DnaJ domain signature 70 85 IPR001623 -
Ssu4g3448 418 Gene3D - 311 402 - -
Ssu4g3448 418 ProSiteProfiles dnaJ domain profile. 50 114 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3448 Ssu-Chr4 85121618 85126450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3448 51 113 C2H2 Transcription Factor Family AT1G74250 47.826 5.20e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3448 K03686 - gmx:100798567 600.512