Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3446 ATGTTAGGTAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGTATTCTCCTTCTAGAACTTGTTAGTGGCAGAAGACCAATGGAAAAGCTTAGTTCCACGGTGAGGCGATCGATAGTTGATTGGGCATTGCCATTGGTTTGTGAGAAGAAATTCAGCGAAATTGCTGATCCAAGACTAAATGGTAACTATGTGGAGGGAGAGCTTAAAAGAGTTGTTTTAGTTGCACTTATGTGTGCTCAGGATCTACCTGAGAAGAGACCCACAATGCTTGATGTGGTAGAGCTACTGAAGGGAGAATCTAAGGATAAATTTTCTCATATAGAGAACAGTGAAATGTTCGGAAGCCCTCTTGCTGCAGAAAGCAATGATGGGAGATCAGTGGCTGATGACAGTTTAGACTATATctcagaagaaaaagaattagaacGTCCGTTGAAAGAGAATGCTGAAATATGA 459 0.39 MLGKANESCDVYSFGILLLELVSGRRPMEKLSSTVRRSIVDWALPLVCEKKFSEIADPRLNGNYVEGELKRVVLVALMCAQDLPEKRPTMLDVVELLKGESKDKFSHIENSEMFGSPLAAESNDGRSVADDSLDYISEEKELERPLKENAEI 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3446 152 PANTHER BNAA05G14800D PROTEIN 1 147 - -
Ssu4g3446 152 Gene3D Transferase(Phosphotransferase) domain 1 1 117 - -
Ssu4g3446 152 PANTHER OS01G0750732 PROTEIN 1 147 - -
Ssu4g3446 152 SUPERFAMILY Protein kinase-like (PK-like) 4 98 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3446 Ssu-Chr4 85110958 85111416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3446 1 101 Receptor kinase-like Gene Family AT3G53380 43.925 1.68e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Ssu4g3446 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3446 - - gmx:100814204 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0108 8 1776941 1779406 Ssu4g3446 4 85110958 85111416 PCT