Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3445 ATGgctttttggttttgttgtgGAAAACTTCCGAGTCGCAGAAGGCGAGGGAAAGAACAACCTACATGGCGGGTGTTTTCTTTGAAGGAATTACACTCTGCTACAAATAATTTCAACTATGATAACAAGCTTGGAGAAGGGGGCTTTGGCAGTGTGTACTGGGGCCAGCTTTGGGATGGGTCGCAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAGAGAAGAGGCGGAGTTTACTGTTGAACTTGAAATATTGGCAAGAATACGACACAAGAATCTTCTCAGTCTGCGTGGCTACTGTGCTGAAGGACAGGAACGGTTAATTGTATATGAATATATGCCAAATTTGAGCCTGCTCTCTCATCTTCGTGGAAATCACTCATTCGAATGTCTTCTTGATTGGAAACGGCGGATGAATATCGCAATTGGGTCTGCTGAGGGAATTGTgtATCTTCACCACCAAGCAACACCACATATCATCCACAGGGATATTAAAGCAAGCAATGTGTTGCTGGATTCGATTTCCATGCTCGGGTTGCTGATTTTGGGTTTTCTAAGTTGGTCCCTGATGGAGCAACTCATGTGA 588 0.4252 MAFWFCCGKLPSRRRRGKEQPTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNREEAEFTVELEILARIRHKNLLSLRGYCAEGQERLIVYEYMPNLSLLSHLRGNHSFECLLDWKRRMNIAIGSAEGIVYLHHQATPHIIHRDIKASNVLLDSISMLGLLILGFLSWSLMEQLM 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3445 195 Gene3D Transferase(Phosphotransferase) domain 1 114 185 - -
Ssu4g3445 195 PANTHER OS01G0750732 PROTEIN 4 174 - -
Ssu4g3445 195 SMART serkin_6 38 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3445 195 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Ssu4g3445 195 ProSiteProfiles Protein kinase domain profile. 38 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3445 195 Gene3D Phosphorylase Kinase; domain 1 11 113 - -
Ssu4g3445 195 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Ssu4g3445 195 PANTHER BNAA05G14800D PROTEIN 4 174 - -
Ssu4g3445 195 SUPERFAMILY Protein kinase-like (PK-like) 19 174 IPR011009 -
Ssu4g3445 195 Pfam Protein tyrosine and serine/threonine kinase 40 174 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3445 Ssu-Chr4 85108430 85110910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3445 26 173 Receptor kinase-like Gene Family AT1G60800 53.691 2.13e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Ssu4g3445 PK_Tyr_Ser-Thr 3.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3445 - - gmx:100814204 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3445 4 85108430 85110910 Ssu4g3445 4 85108430 85110910 ECH