Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3429 ATGTTTCCTGAAGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGCGGGGCTGCTTTTGGATTCCCGAGACTCCTGAAGACGCTGCCAGAGCTGGGCTTATTAGTGGGAAGGATAATATCATTGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGACTATTTCCTTGGAAGCTCTTTTGCTTGGAGTGCTGATGATATTAAGCCTGAAGACGTCGGTGCTTTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCACTGTGTATGTCGTGGTTCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAAGAGAACAATGGAGATGATGTACAAGGATATTGTTCAGGCACTCAGGGCTAAGGGAATCGAGGACGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGAAATCGGGAAGTGAAGAAATCAGGAGAATATGAGCCTTCTGAACAACCAGATCCTGATTCAGATTATCAGAGAGCCCAAATGGCCCGACGTTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGACGAATACATAATCATTGGATCTGCCAACATCAACCAAAGGTCAATGGATGGTTCTAGGGACTCCGAGATTGCCATGGGTGCTTATCAGCCCTATCATTTGGCTGCCAGACAGCCGGCACGAGGTCAGGTCCATGGTTTCCGCATGTCATTGTGGTACGAGCACCTTGGCATGCTTCATGACTCCTTCCTCCGGCCAGAAAGTGAAGAATGCATTAGTAAGGTGAACCAGATTGCTGACAAATATTGGGACCTCTATTCTAGGGAGTCACTTGAGCGTGACCTCCCTGGTCACCTGCTCCGCTACCCTATTGGGGTTGCCAGTGAAGGAGATGTCACTGAGCTGCCAGGATATGAATTCTTCCCTGACACCAAGGCGCGCATTCTTGGTGGCAAAGCTGACTACCTCCCCCCTATCCTCACTACTTAG 1041 0.4649 MFPEDHETWNVQLFRSIDGGAAFGFPRLLKTLPELGLLVGRIISLIVAFKMLILMLFDYFLGSSFAWSADDIKPEDVGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDIVQALRAKGIEDDPRNYLTFFCLGNREVKKSGEYEPSEQPDPDSDYQRAQMARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGSRDSEIAMGAYQPYHLAARQPARGQVHGFRMSLWYEHLGMLHDSFLRPESEECISKVNQIADKYWDLYSRESLERDLPGHLLRYPIGVASEGDVTELPGYEFFPDTKARILGGKADYLPPILTT 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3429 346 SMART pld_4 192 219 IPR001736 GO:0003824
Ssu4g3429 346 Pfam Phospholipase D Active site motif 193 219 IPR001736 GO:0003824
Ssu4g3429 346 Pfam Phospholipase D C terminal 265 335 IPR024632 -
Ssu4g3429 346 PANTHER PHOSPHOLIPASE D 1 346 IPR015679 -
Ssu4g3429 346 PANTHER PHOSPHOLIPASE D ALPHA 1 1 346 - -
Ssu4g3429 346 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 192 219 IPR001736 GO:0003824
Ssu4g3429 346 SUPERFAMILY Phospholipase D/nuclease 85 276 - -
Ssu4g3429 346 Gene3D Endonuclease Chain A 62 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3429 Ssu-Chr4 84918693 84919892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3429 1 346 Phospholipase D Gene Family (Wang group) AT3G15730 76.751 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3429 K01115 - gmx:100786410 619.387