Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3428 ATGGCGCAAATTCTGCTTCATGGGACTCTCCACGCCACCATCTACGAGGTTGATAGGCTCAAtgctggtggtggtggcaatttTTTCAGCAAGCTCAAGCAAAACTTGGAGGAGACTGTTGGTATTGGAAAGGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTCGGAAGGACTAGAATTATAGAAAATGAACATAGTAATCCCAGATGGTATGAGTCTTTTCACATTTATTGTGCCCATATGgcttcaaatattatattcacTGTGAAAGACGATAATCCTATTGGGGCAACTTTAATTGGAAGAGCATATGTGCCTGTTTCGGAGGTTTTGGATGGTGAGGAAATAGATAGGTGGGTTGAAATCTTGGACAAGGATAAAAATCCAATACATGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCGCAAAAGACCGCAACTGGGCTCGAGGCATTAGAAGTCCTAAATTCCCTGGAGTTCCCTACACTTTCTTCTCACAAAGGCAAGGATGCAAGGTATCTCTGTACCAAGATGCTCATGTACCtgataattttgtccctaaaatacCTCTTGCTGGAGGCAAGACTTATGAGCCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACTGATGCAAAACACTTAATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGCGTGGGGGAGACCAAATGCTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTTAAGGTTTTGATTCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGACTGATGGCTACTCATGATGAAGAAACCGCTCGGTTCTTCGAAGGCACTGATGTGCATTGTGTTTTGTGCCCCCGCAATCCTGATGATGGTGGGAGCATTGTTCAGGATTTACAAATTTCTACCATGTTTACTCATCATCAGAAGATTGTGGCGGTTGACAGTGCGTTGCCAGGTGGAGGGTCAGATAAGCGAAGAATTGTGAGTTTTGTTGGGGGTATTGACCTCTGCGACGGAAGGTATGACACTGCCTTCCACTCACTTTTCAGAACCCTAGACACAGCACACCATGATGATTTTCATCAGCCTAACTTTCCTGGTGCTGCAATCACAAAGGTGGTCCCAGGGAACCTTGGCATGACATCCACTCCCGGCTTGAAGGACCCATAG 1242 0.4203 MAQILLHGTLHATIYEVDRLNAGGGGNFFSKLKQNLEETVGIGKGVTKLYATIDLEKARVGRTRIIENEHSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGEEIDRWVEILDKDKNPIHEGSKIHVKLQYFDVAKDRNWARGIRSPKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKIPLAGGKTYEPHRCWEDIFDAITDAKHLIYITGWSVYTEISLVRDSRRPKRGGDQMLGELLKKKASEGVKVLILVWDDRTSVGLLKKDGLMATHDEETARFFEGTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVAVDSALPGGGSDKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKVVPGNLGMTSTPGLKDP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3428 413 Gene3D Endonuclease Chain A 200 385 - -
Ssu4g3428 413 Gene3D C2 domain 7 158 IPR035892 -
Ssu4g3428 413 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Ssu4g3428 413 PANTHER PHOSPHOLIPASE D ALPHA 1 2 399 - -
Ssu4g3428 413 PANTHER PHOSPHOLIPASE D 2 399 IPR015679 -
Ssu4g3428 413 SMART C2_3c 9 124 IPR000008 -
Ssu4g3428 413 SUPERFAMILY Phospholipase D/nuclease 152 372 - -
Ssu4g3428 413 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Ssu4g3428 413 CDD C2_plant_PLD 2 148 - -
Ssu4g3428 413 Pfam C2 domain 9 127 IPR000008 -
Ssu4g3428 413 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Ssu4g3428 413 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3428 Ssu-Chr4 84916495 84918582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3428 1 399 Phospholipase D Gene Family (Wang group) AT3G15730 80.549 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3428 K01115 - gmx:100794849 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3428 4 84916495 84918582 Ssu8g0120 8 1927143 1931773 ECH
Ssu4g3428 4 84916495 84918582 Ssu4g3428 4 84916495 84918582 ECH
Ssu8g0119 8 1907832 1914288 Ssu4g3428 4 84916495 84918582 PCT