Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3424 ATGGGAGAATTGAAGGACACTGAGGCTTACGAGGAAGAGCTCCTCGACTacgaagaagaagatgaaaaagctGCCGATTCTGCCAAACCCACTGCTGAATCTGGCAAGAAGGGTTATGTTGGCATCCATAGTTCAGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGTAGATTCAGGCTTTGAGCATCCTTCCGAAGTGCAACATGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTCATTTGCCAAGCGAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCAACTCTTCAGCAAGTTGATCCTATTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACTAGAGAACTGGCTTATCAGATTTGCCACGAATTTGAGAGATTCAGCACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGTGTCAACATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGCCCACATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGGCTAGAGACAAGGACCTTGGTTTAAAGAACGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGATATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAGCAAGTGATGATGTTTTCAGCTACACTCAGTAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATggaaatttatgtagatgatgaGGCCAAATTGACTCTTCATGGTCTTGTGCAGCACTACATCAAATTGCAAGAGCCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCTCTGGACTTCAACCAAAtagttatttttgtcaaaagtgTTAGCAGAGCTGGAGAGCTAAACAAGTTGCTTGTGGAATGTAACTTCCCATCCATCTGCATACATTCTGCAATGTCACAGGAAGAGAgATTGAAACGATACAAGGGCTTCAAAGAAGGGAAACAAAGGATTCTTGTAGCAACAGATTTAGTAGGAAGGGGGATTGACATAGAACGtgttaatatagttattaactATGACATGCCTGATTCTGCTGATACTTACTTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACGAAGGGTCTTGCAATTACTTTTGTGTCCTCTACTGCTGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTTCCACATATATGCCAAATTGA 1281 0.3989 MGELKDTEAYEEELLDYEEEDEKAADSAKPTAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPIPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQIVIFVKSVSRAGELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3424 426 MobiDBLite consensus disorder prediction 1 35 - -
Ssu4g3424 426 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Ssu4g3424 426 CDD DEADc_DDX39 44 251 - -
Ssu4g3424 426 CDD SF2_C_DEAD 262 391 - -
Ssu4g3424 426 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Ssu4g3424 426 Pfam Helicase conserved C-terminal domain 275 382 IPR001650 -
Ssu4g3424 426 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 26 421 - -
Ssu4g3424 426 SMART helicmild6 301 382 IPR001650 -
Ssu4g3424 426 SMART ultradead3 64 265 IPR014001 -
Ssu4g3424 426 Gene3D - 258 426 IPR027417 -
Ssu4g3424 426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 422 IPR001650 -
Ssu4g3424 426 Gene3D - 41 257 IPR027417 -
Ssu4g3424 426 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Ssu4g3424 426 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 421 - -
Ssu4g3424 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 396 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3424 Ssu-Chr4 84856484 84861621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3424 1 426 Eukaryotic Initiation Factors Gene Family AT5G11200 82.265 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3424 K12812 - gmx:100799082 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3424 4 84856484 84861621 Ssu4g3424 4 84856484 84861621 ECH