Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3390 ATGGTTGGAGGTTCCCTAGCAGGGTTGCAAGAGCACCTTAAGTTGGCCCGAGACTACGCTGTCGAAGGCCTCTACGACACCTCCATCATCTTCTTCGACGGCGCCCTCGCCCAGATCAACAAgCACCTAAGCACCGTTGACGACCCTTTAATCCGTGCGAAATGGATGAACGTTAAGAAAGCGCTTTCCGAGGAAACGGAAGTCGTGAAGCAGCTGGATGCGGAGAGAAGGGCGTTTAAAGACAACCCCATTGGAAGACGCCCTGCGTCGCCCCCCATATCTGCGaagtcgtcgtcgtcgtcgtcgtttGTTTTTCAGCCGTTGGATGAGTACCCGACTTCATCGAGCGGTCCCGTTGACGATCCTGACGTGTGGAGGCCGCCTAGCAGGGACACCACGAGTCGGAGACCCGCGAGGTCGGGTCCAGTGGGTGCCCGGAAATCCTCGCAAGATGGGGCCTGGGCCCGAGGGTCTACCGCAAGAACCGGTGCAGCTGGCCGTGGTGCGAAAGCTGGTGCTACGAGTAGGGTTAACTCGGGGACCCGGGCATCGACTACTGGAAAGAAAGGCAATGTTTCCGGGAAGCCTAGCAAGACTGATACAGCTGTGACTAATGGTGATGCCGAAGACGGTAAGTCAAAGAAGGGTCAATATGAAGGTCCTGATCCTGAATTGGCTGCAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGATGATGTTGCGGGGCTTACAGAAGCAAAAAGGCTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCAGAATATTTCCAGGGAATCAGGAGACCGTGGAAAGGTGTCCTCATGTTTGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACAACTTTCTTTAATGTATCTTCTGCTACTTTGGCTTCTAAATGGCGCGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTCATTGATGAAATTGATTCCCTATGCAATGCTAGGGGGGCATCTGGGGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCCGCTACTAACTTCCCATGGGATATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGTGGCCCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGAGGGCTATAGTGGAGATGATTTGACAAATGTTTGTCGTGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAAATTTCAAAGGATCCTGTTGCCATGTGTGACTTTGAAGAAGCTTTGGGAAAGGTCCAACGGAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACCGAGTTTGGATCAGCATAA 1584 0.4912 MVGGSLAGLQEHLKLARDYAVEGLYDTSIIFFDGALAQINKHLSTVDDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKDNPIGRRPASPPISAKSSSSSSFVFQPLDEYPTSSSGPVDDPDVWRPPSRDTTSRRPARSGPVGARKSSQDGAWARGSTARTGAAGRGAKAGATSRVNSGTRASTTGKKGNVSGKPSKTDTAVTNGDAEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALGKVQRSVSQADIERHEKWFTEFGSA 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3390 527 MobiDBLite consensus disorder prediction 205 221 - -
Ssu4g3390 527 Pfam Vps4 C terminal oligomerisation domain 480 525 IPR015415 -
Ssu4g3390 527 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 527 - -
Ssu4g3390 527 PANTHER AAA DOMAIN-CONTAINING 4 527 - -
Ssu4g3390 527 MobiDBLite consensus disorder prediction 92 113 - -
Ssu4g3390 527 Pfam ATPase family associated with various cellular activities (AAA) 279 416 IPR003959 GO:0005524|GO:0016887
Ssu4g3390 527 Gene3D - 417 503 - -
Ssu4g3390 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 513 IPR027417 -
Ssu4g3390 527 MobiDBLite consensus disorder prediction 174 204 - -
Ssu4g3390 527 Gene3D - 237 518 IPR027417 -
Ssu4g3390 527 Gene3D - 4 80 - -
Ssu4g3390 527 ProSitePatterns AAA-protein family signature. 388 407 IPR003960 GO:0005524|GO:0016887
Ssu4g3390 527 Pfam AAA+ lid domain 438 479 IPR041569 -
Ssu4g3390 527 SMART AAA_5 275 418 IPR003593 -
Ssu4g3390 527 MobiDBLite consensus disorder prediction 79 221 - -
Ssu4g3390 527 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 527 IPR028596 GO:0008017|GO:0008568|GO:0051013
Ssu4g3390 527 Coils Coil 62 82 - -
Ssu4g3390 527 CDD AAA 273 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3390 Ssu-Chr4 84447402 84450918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3390 231 519 Calmodulin-binding Proteins AT3G56690 39.933 9.16e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3390 K07767 - gmx:100787634 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3390 4 84447402 84450918 Ssu4g3390 4 84447402 84450918 ECH
Ssu8g0165 8 2496779 2499621 Ssu4g3390 4 84447402 84450918 PCT