Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3389 atgaagaaagaaaacagTGCTATGCTGAAAGCTGGGGAGCTCCCCAGTCGATTGACTCGTGCTCGAGCTGCTGCTGCTTCACGTGCATCTGGACAGCTACCCCCTTTGAAAGAGCGAGCACAGCAAAATCAGCAGCAGTTATCCAGAGTCAATTCAAAAAGAGCAGTTTCTGATAATACATGTCCTCAGCGTAAAAAGAGGGCTGTTCTTCGGGAAGTTACTAATGTTTGCTGTGAAAATACATACAAGGGTTGTTTCAACTCAACTAAAATTCAGGCTAAGAAAAGCAAGCTGGCTAAGGCTGGTCAAATTAATGCGTCCAAAGTGGCTCCTTCTGTTGCTGTGGAGCCACTACAATTTCAAGTTGACTCCAAAGCAAAGAGTTTACAGGAAACAGCACTGAAATCAGAAGATACTATGTGCTCAATTAATTTGGAAAACAATGAACTTATACGGCTGAGTACCAATGAGTGTAACAAAGATTTTAGACTGCCTGAAAGTCAGATGTCTGGAATATCTGCTCATCCTTTGGTTTCTCTGAAGAAAGACAAGAAAGATAACCTTTCGAAACTTTTGACTGCATTGAAGGATCCAGACATCACTAATATAGATAATGATTTTGAAGATCCTCAATCGTGCAGCCTCTATGCTGCTGATATCTATGACTACATACGGGTTGCTGAGCTTGCAAGAAGGCCGTATCATAACTTTATGGAGACAGTGCAGCGAGACATTACTCAAAGCATGCGTGGAATACTAGTTGATTGGCTTGTAGAGgtttCTGAGGAGTACAAATTGGTTACAGACACTCTTTACCTCACTGTGTATCTCATAGATCGGTTTCTCTccaaaaattacattgaaagaCAAAGACTTCAGCTACTTGGCATCACCTGCATGCTAATTGCCTCGAAGTACGAAGAAATCAATGCCCCACGTATTGAAGATTTCTGCTTCATCACGGACAATACTTACAAGAAAGTGGAGGTACTAAAAATGGAGAGTCAAGTGTTAAAGTCGTCTGAATATCAACTGTTTGCTCCCACTACACAAACTTTCCTCAGGAGGTTTCTTCGAGCAGCACAAGCTTCATACAAGGACCCCAGCCTTGAATTGGCAGTACCTGGCCAATTACCTAGCTGA 1143 0.4112 MKKENSAMLKAGELPSRLTRARAAAASRASGQLPPLKERAQQNQQQLSRVNSKRAVSDNTCPQRKKRAVLREVTNVCCENTYKGCFNSTKIQAKKSKLAKAGQINASKVAPSVAVEPLQFQVDSKAKSLQETALKSEDTMCSINLENNELIRLSTNECNKDFRLPESQMSGISAHPLVSLKKDKKDNLSKLLTALKDPDITNIDNDFEDPQSCSLYAADIYDYIRVAELARRPYHNFMETVQRDITQSMRGILVDWLVEVSEEYKLVTDTLYLTVYLIDRFLSKNYIERQRLQLLGITCMLIASKYEEINAPRIEDFCFITDNTYKKVEVLKMESQVLKSSEYQLFAPTTQTFLRRFLRAAQASYKDPSLELAVPGQLPS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3389 380 SUPERFAMILY Cyclin-like 208 344 IPR036915 -
Ssu4g3389 380 MobiDBLite consensus disorder prediction 36 58 - -
Ssu4g3389 380 PANTHER CYCLINS 46 370 IPR039361 -
Ssu4g3389 380 ProSitePatterns Cyclins signature. 250 281 IPR006671 -
Ssu4g3389 380 PIRSF Cyclin_A_B_D_E 20 373 IPR039361 -
Ssu4g3389 380 Pfam Cyclin, N-terminal domain 219 344 IPR006671 -
Ssu4g3389 380 CDD CYCLIN 249 338 IPR013763 -
Ssu4g3389 380 Gene3D - 233 346 - -
Ssu4g3389 380 PANTHER CYCLIN-A2-4 46 370 - -
Ssu4g3389 380 MobiDBLite consensus disorder prediction 1 60 - -
Ssu4g3389 380 SMART cyclin_7 255 339 IPR013763 -
Ssu4g3389 380 Gene3D - 219 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3389 Ssu-Chr4 84419387 84423697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3389 1 372 Core Cell Cycle Gene Families AT1G80370 47.507 1.53e-101 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3389 K06627 - gmx:100789757 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3389 4 84419387 84423697 Ssu4g3389 4 84419387 84423697 ECH