Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3387 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTCTACCCAATGCAGAGCATGTAAGTGTTGTCAATAAGAATGAGAAGAAGAGGGCATTCTCGGAAATTGGTGGTGTTGGGGATGAAAATAGCTCCTCCGGTGACCGGAAAATCGAGAAGAAGAATCAAGTGGTGGGGTGGCCTCCCGTATGCTCGTATCGGAAGAAGAACAGCATAAACGAAGCTTCAAAAATGTACGTCAAGGTTAGCATGGACGGTGCTCCCTTCTTGCGTAAAATCGATCTGGGTATGCATAAGGCATACTCAGATTTAGCTTTGGCTTTGGAGAAGCTCTTTGATTGCTATGGAATGGGTGATGGAGCATTGAAGAATGCGGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGACGTCCCTTGGGAAATGTTTATCGAATCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGGTCTGCAACCAAAAGGATCTTCTTTAAAGGGATTCATAGAAAGCGTGGCAAAGTGA 573 0.4538 MAKEGLGLEITELRLGLPNAEHVSVVNKNEKKRAFSEIGGVGDENSSSGDRKIEKKNQVVGWPPVCSYRKKNSINEASKMYVKVSMDGAPFLRKIDLGMHKAYSDLALALEKLFDCYGMGDGALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSSLKGFIESVAK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3387 190 Pfam AUX/IAA family 45 172 IPR033389 -
Ssu4g3387 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 172 IPR003311 GO:0005634|GO:0006355
Ssu4g3387 190 Gene3D - 73 177 - -
Ssu4g3387 190 ProSiteProfiles PB1 domain profile. 79 168 IPR000270 GO:0005515
Ssu4g3387 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 172 - -
Ssu4g3387 190 SUPERFAMILY CAD & PB1 domains 73 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3387 Ssu-Chr4 84392976 84396969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3387 54 170 B3 DNA Binding Superfamily AT4G23980 35.043 1.75e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu4g3387 AUX_IAA 3.9e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3387 K14484 - gmx:100791342 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3387 4 84392976 84396969 Ssu4g3387 4 84392976 84396969 ECH
Ssu4g3387 4 84392976 84396969 Ssu8g0170 8 2554124 2582643 PCT