Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3381 ATGATTCAAAATGGTTGCATTGTATCGCAAGGGTGTGCCCCTGTGAATTATAGGTCATGCAACGGTGTCATACCTAGTAGCTCCGTCTTTCGTTGCGCTTCTCGAATACCTCCTAAGGTTGCTGTCTCAAACATCCGGAGTTTTTGGGGACATAATCTGGAATGTAAATCCTGGTTGCCAAGAGGAAAAGGAATGAAACTCTCAAACATGTTTGCTGCATCAAGCGGACATTTAAGTGAGGATCAAAATCTTCTCTTTCACACTTTCCCTGTGTTACCCCGGTTGCGCAAGTCTAATATGGCCCCTCGAGCATCGAAGGATGTCCCAACTAGCTTCCGTTTTCCTCCAATGACCAAAAAACCGCAATGGTGGTGGAGATCATTAGCATGCCTCCCTTACCTCATGCCTCTCCATGAGACATGGATGTATGCTGAGACAGCATACAATCTTCACCCGTTTTTGGAATGCTTTGAATTCTATACGTACCCTTTTCTCATGGCAATTGGGAGCCTACCTAGCTGGTTTCTCATGGCATACTTTTTTGTTGCATATCTTGGAATTGTGAGGAGAAAAGAATGGCCTCATTTCTTCAGATTTCATGTTGTGATGGGAATGTTATTGGAGATTGCGCTGCAGGTTATCGGGACTGTGAGCCGTTGGATGCCACTATCACTCTACTGGGGTAAACTGGGAATGCATTTCTGGACTGCCGTATCATTTGGTTATCTCTTTACTGTCTTGGAGTGCATAAGGTGTGCTCTTGTTGGTATGTATGCTGACATTCCTTTCATCTGTGACGCAGCATATATCCAAATACCATATGATTAA 828 0.442 MIQNGCIVSQGCAPVNYRSCNGVIPSSSVFRCASRIPPKVAVSNIRSFWGHNLECKSWLPRGKGMKLSNMFAASSGHLSEDQNLLFHTFPVLPRLRKSNMAPRASKDVPTSFRFPPMTKKPQWWWRSLACLPYLMPLHETWMYAETAYNLHPFLECFEFYTYPFLMAIGSLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLSLYWGKLGMHFWTAVSFGYLFTVLECIRCALVGMYADIPFICDAAYIQIPYD 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3381 275 TIGRFAM 3a0901s05TIC20: chloroplast protein import component, Tic20 family 1 275 IPR005691 -
Ssu4g3381 275 Pfam Chloroplast import apparatus Tic20-like 95 268 IPR005691 -
Ssu4g3381 275 PANTHER PROTEIN TIC 20-II, CHLOROPLASTIC 1 275 IPR005691 -
Ssu4g3381 275 PANTHER HIT-TYPE ZINC FINGER FAMILY PROTEIN-RELATED 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3381 Ssu-Chr4 84215386 84216894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3381 90 275 Chloroplast and Mitochondria Gene Families AT4G03320 42.328 1.67e-47 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3381 - - gmx:100818669 521.546