Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3380 ATGGGTGTGAACTCCAACAGAGTTGAGCACTTACTAGCTTGCAACAACAATGGGAGCAGCATTAAGATCCAAGCCGAGATACAAATGCCACCCTTGGAAATCCACAAGGTTCGGTTGCCCCCAGAGCGCACCACCCTCCAAAAACTCAGACACAGACTCTCTGAGATCTTCTTCCCAGATGACCCTCTCTACAGGTTCAAGAACCAAACACGCCTCATGAAGCTCCTCCTTGCTCTCCAATACTTGTTCCCTATTTTCCAATGGGCATCTCACTACAACCTTACCCTTCTCCGCTCTGACATCATCTCTGGCCTCACCATTGCTAGCCTCGCAATTCCTCAGGGAATCAGCTATGCTAAGCTTGCAAACTTGCCACCTATTGTTGGATTATATTCCAGTTTTGTGCCTCCGTTGATATATTCCCTGCTTGGAAGTTCTAGACATCTCGGTGTTGGTCCAGTTTCGATTGCATCTTTGGTCATGGGATCGATGTTAAGCGAGACGGTTTCTTATAGTCAAGATCCAATTCTCTATCTTAAGTTGGCTTTCACTGCCACTTTTTTTGCCGGGTTGTTCCAATCTTCTCTGGGTATATTAAGGTTAGGCTTTGTAATTGATTTTCTCTCAAAGGCAACGCTAGTAGGTTTCATGGCCGGTGCAGCGATCATCGTGTCACTGCAGCAGCTGAAAGGGTTGCTTGGAATAGTTCATTTCACCAACAAGATGCAGATAACACCTGTGCTTATCTCTGTTTTCAAGCAAAGAGATGAGTGGTCATGGCAAAACTTTCTGCTGGGATTCGGTTTCCTAGCATTCCTGTTGACAACAAGGCACATTAGCTTGAAGAAGCCAAAATTATTCTGGGTTTCAGCAGCTGCCCCGTTGACATCAGTCATTCTGTCGaccattttagtatttattctGAGAAACAAGACCCATAAAATTGCTATTATTGGTGAATTGCCAAAGGGACTTAATCCACCATCATCAAACATGTTATACTTCAATGGTCCTTATTTGGCTCTTGCTATCAAAACAGGACTAGTCACTGGGATTTTGTCTCTCACTGAAGGAATTGCAGTAGGAAGAACATTTGCTGCACTTAAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCCATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGCTATGTTACAACAGGATCCTTTTCTCGATCAGCTGTTAACTACAATGCCGGGGCACAGACAGCAATCTCGAATATAATCATGGCGTCAGCAGTTCTTGTGACCCTTTTGTTTCTCATGCCACTGTTCTATTACACACCGAATGTAGTCTTAGCAGCCATTATCATCACAGCTGTTGTAGGACTAATAGATTATCAAGCTGCATATAAATTGTGGAAGGTTGACAAGCTTGATTTCTTGGCCTGTTTGTGCTCCTTTTTTGGTGTTCTATTCATTTCAGTGCCTTTAGGCCTTGGAATAGCGGTGGCAATATCAGTCTTCAAGATTCTGCTTCATGTCTCTAGGCCAAACACACTGGTTTTGGGGAATATACCAGGGACGCCAATATTCCACAACCTAAACCAATATAGAGAAGCTTTGAGGATTCCTTCATTTATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCTAATTCAACGTACCTGCAAGAAAGGATATTGAGATGGGTTCGAGAAGAGGAAGAGCGAGTAAAAGTAAACAATGAAAGTACATTGAAGTGCATAGTTTTGGACATGACAGGTACGTATTTCATCTGA 1776 0.4285 MGVNSNRVEHLLACNNNGSSIKIQAEIQMPPLEIHKVRLPPERTTLQKLRHRLSEIFFPDDPLYRFKNQTRLMKLLLALQYLFPIFQWASHYNLTLLRSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSLLGSSRHLGVGPVSIASLVMGSMLSETVSYSQDPILYLKLAFTATFFAGLFQSSLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQITPVLISVFKQRDEWSWQNFLLGFGFLAFLLTTRHISLKKPKLFWVSAAAPLTSVILSTILVFILRNKTHKIAIIGELPKGLNPPSSNMLYFNGPYLALAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAISNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVVGLIDYQAAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVAISVFKILLHVSRPNTLVLGNIPGTPIFHNLNQYREALRIPSFIILAVESPIYFANSTYLQERILRWVREEEERVKVNNESTLKCIVLDMTGTYFI 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3380 591 TIGRFAM sulP: sulfate permease 84 586 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu4g3380 591 PANTHER SULFATE TRANSPORTER 21 587 IPR001902 GO:0015301|GO:0016020|GO:0055085
Ssu4g3380 591 Gene3D STAS domain 508 591 IPR036513 -
Ssu4g3380 591 Pfam STAS domain 529 590 IPR002645 -
Ssu4g3380 591 ProSiteProfiles STAS domain profile. 528 591 IPR002645 -
Ssu4g3380 591 Pfam Sulfate permease family 97 476 IPR011547 GO:0016021
Ssu4g3380 591 ProSitePatterns SLC26A transporters signature. 126 147 IPR018045 GO:0008271|GO:0008272
Ssu4g3380 591 PANTHER SLC26A/SULP TRANSPORTER-RELATED 21 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3380 Ssu-Chr4 84196128 84199645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3380 1 586 Inorganic Solute Cotransporters AT3G15990 75.597 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3380 K17471 - gmx:100817604 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3380 4 84196128 84199645 Ssu4g3380 4 84196128 84199645 ECH
Ssu8g0184 8 2769983 2774396 Ssu4g3380 4 84196128 84199645 PCT