Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3376 ATGAGCGTGGTGGGATTCGATTTCGGTAACGAGAGTTGCATTGTTGCGGTTGCGAGGCAGAGAGGGATCGACGTTGTGCTCAATGACGAGTCCAAGCGTGAAACGCCCGCTGTTGTATGCTTTGGCGACAAGCAACGCTTCGTTGGCACTGCTGGTGCTGCTTCCACTATGATGAACCCTAAGAATTCAATCTCGCAGATTAAGAGACTCATTGGTAGAAAATTCTCCGATCCCGAACTGCAGCGGGATCTTAAGTCATTGCCGTTTCTTGTGACCGAGGGCCACGATGGGTTCCCAGTGATTCACGCGTGCTACTTGGGTGAGGGTAAGGCGTTTACGCCTACCCAAGTGTTTGGGATGATGTTGTCAAATCTTAAGGAAATTGCGCAGAAGAATCTCACTGCGGCGGTTGTTGATTGCTGCATTGGAATCCCGGTTTATTTTACTGATCTTCAGAGAAGGGCGGTGTTGGACGCGGCCACGATTGCCGGTCTGCACCCGCTTCGGTTGATTCATGAAATGACTGCCACTGCCTTGGCCTATGGGATTTATAAAACGGACCTTCCTGAGAATGATCAGCTGAATGTTGCGTTTGTTGATGTTGGGCATGCTAGTATGCAGGTGTGCATTGCTGGATTCAAAAAGGGGCAGCTGAAGGTGTTGGCTCATTCGTTCGATAGGTCGCTGGGCGGTAGGGATTTTGATGAGGTTTTGTTCCACCACTTTGCTGGGAAGTTTAAGGAGGAGTACAAGATTGATGTGTTCCAGAATGCCAGGGCTTGCATAAGGCTCAGGGCTGCCTgtgagaagatgaagaagatgcTTAGTGCGAATCCTGAGGCGCCTCTCATGATTGAGTGCTTGATGGACGAGAAGGACGTCCGGGGATTCATCAAGCGTGATGAATTTGAGAAACTGAGTCTTCCCATTTTGGAACGTGTGAAGGGACCTTTGGAGAAGGCACTTGCTGAAGCAGGTCTTACGGTTGAAAATGTGCACATGGTTGAGGTGGTCGGTTCAGGTTCTCGTGTACCGGCCATAAACAGAATATTGAcagagtttttcaaaaaggaGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGTTGTGCGCTGCAATGTGCAATTCTTAGTCCAACGTTTAAAGTTCGGGAATTTCAGGTCAACGAAAGCCTTCCTTTCTCGATTTCTCTTTCATGGAAAGGTTCTGGTCCAGATGCACAGGACAGTGGACCAGAAAATCAGCAGAAGTCCCTTGTTTTTCCCAAGGGTAATCCCATACCAAGTACCAAGGCACTGACATTCTACAGGTCAGGAACATTTTCTGTTGATGTACAATATGGTGATGCGAGTGGGATGCAAACACCTGCTAGGATCAGCACATATACTATTGGTCCTTTCCAAACTACAAATAGTGAAAGGGCAAAAGTTAAAGTTAAAGTTCGTTTGAATCTGCATGGAATTGTATCTGTTGAGTCTGCAACGCTCCTGGAAGAGGAAGAAGTTGAGGTTCCAGTTTCCAAAGAAGCAGCTGGGGAAGATACTAAGATGGAAATTGATGAAGCTCCAGCTGACGCTGCTGCACCTCCTGCCTCCAATGACACTGGTGCTAATATGCGAGATGCAAAGGCTAGTACTGATGCCTCTGGGGTTGAAAATGGTATCCCTGAGAGTGGAGATAAGCCTTTGCAAGCGGATAGCGATACCAAGGTTCAGGCTCCaaagaaaaaggttaagaaGACAAACATTCCTGTAGCAGAGATAGTTTATGGAGCAATGGTGCCTGTGGATGTCCAGAAAGCAGTAGAGAGGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAAGAAacaaaagacaagaaaaatgcAGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTTGTCACTGCTTCAGAGAGAGAGGATTTTACTGCCAAACTTCAGAAAGTGGAAGATTGGCTTTATGAAGATGGTGAAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGCAATGTGATCCAATTGAAGGGCGTTACAAAGAATACATGGAGAGGGGTACTATAATTGAACAGTTCAGCTATTGTATAAATAGTTACAGAGAAGCTGCAATGTCGAATGATCCCAAATTTGATCACATTGACATTAACGAGAAACAGAAGGTCTTAAATGAATGTGACGAAGCTGAGAACTGGTTTAGGGAGAAACACCAGCAGCAGAAGTCGCTTCCAAAATATGTCAACCCTGTACTCTTGTCAGCTGAAATAAGAAGGAAAGCTGAGGCTGTCGATAGgTTTTGTAAGCCAATTATGATAAAACCAAGGCCTGCCAAGCCGGCTACTCCACCAGGACCAGCAACCCCATCTTCGCAGAGTGATGAGCGGCAGCAACCTCAGGGGGATGCTGATGTCAACACTAATAATGAGAATGCTGGGGATAGCGGTAGTCAGGAAGCACCAGCGTCTGCTGAACCAATGGAGACTGATAAGTCTGAGAACGCAGGCTCTgcctaa 2562 0.4512 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAVVCFGDKQRFVGTAGAASTMMNPKNSISQIKRLIGRKFSDPELQRDLKSLPFLVTEGHDGFPVIHACYLGEGKAFTPTQVFGMMLSNLKEIAQKNLTAAVVDCCIGIPVYFTDLQRRAVLDAATIAGLHPLRLIHEMTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLAHSFDRSLGGRDFDEVLFHHFAGKFKEEYKIDVFQNARACIRLRAACEKMKKMLSANPEAPLMIECLMDEKDVRGFIKRDEFEKLSLPILERVKGPLEKALAEAGLTVENVHMVEVVGSGSRVPAINRILTEFFKKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESLPFSISLSWKGSGPDAQDSGPENQQKSLVFPKGNPIPSTKALTFYRSGTFSVDVQYGDASGMQTPARISTYTIGPFQTTNSERAKVKVKVRLNLHGIVSVESATLLEEEEVEVPVSKEAAGEDTKMEIDEAPADAAAPPASNDTGANMRDAKASTDASGVENGIPESGDKPLQADSDTKVQAPKKKVKKTNIPVAEIVYGAMVPVDVQKAVEREFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVTASEREDFTAKLQKVEDWLYEDGEDETKGVYIAKLEELKKQCDPIEGRYKEYMERGTIIEQFSYCINSYREAAMSNDPKFDHIDINEKQKVLNECDEAENWFREKHQQQKSLPKYVNPVLLSAEIRRKAEAVDRFCKPIMIKPRPAKPATPPGPATPSSQSDERQQPQGDADVNTNNENAGDSGSQEAPASAEPMETDKSENAGSA 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3376 853 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 852 - -
Ssu4g3376 853 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Ssu4g3376 853 ProSiteProfiles Ig-like domain profile. 345 463 IPR007110 -
Ssu4g3376 853 MobiDBLite consensus disorder prediction 526 579 - -
Ssu4g3376 853 CDD HSPA4_like_NDB 2 381 - -
Ssu4g3376 853 MobiDBLite consensus disorder prediction 803 833 - -
Ssu4g3376 853 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 593 IPR029047 -
Ssu4g3376 853 PRINTS 70kDa heat shock protein signature 363 383 - -
Ssu4g3376 853 PRINTS 70kDa heat shock protein signature 30 42 - -
Ssu4g3376 853 PRINTS 70kDa heat shock protein signature 2 15 - -
Ssu4g3376 853 PRINTS 70kDa heat shock protein signature 140 160 - -
Ssu4g3376 853 PRINTS 70kDa heat shock protein signature 332 348 - -
Ssu4g3376 853 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 713 796 IPR029048 -
Ssu4g3376 853 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 629 IPR029047 -
Ssu4g3376 853 MobiDBLite consensus disorder prediction 786 853 - -
Ssu4g3376 853 Gene3D - 186 360 - -
Ssu4g3376 853 Gene3D - 38 113 - -
Ssu4g3376 853 Gene3D - 598 705 IPR029048 -
Ssu4g3376 853 Gene3D - 5 374 - -
Ssu4g3376 853 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 599 695 IPR029048 -
Ssu4g3376 853 PANTHER HSC70CB, ISOFORM G-RELATED 1 852 - -
Ssu4g3376 853 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Ssu4g3376 853 Pfam Hsp70 protein 3 696 IPR013126 GO:0005524|GO:0140662
Ssu4g3376 853 Gene3D Actin; Chain A, domain 4 230 313 - -
Ssu4g3376 853 MobiDBLite consensus disorder prediction 406 426 - -
Ssu4g3376 853 Coils Coil 682 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3376 Ssu-Chr4 84174086 84178882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3376 2 692 Miscellaneous Gene Families AT5G28540 27.977 5.84e-84 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3376 K09489 - gmx:100816539 1494.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3376 4 84174086 84178882 Ssu4g3376 4 84174086 84178882 ECH
Ssu8g0189 8 2812438 2816178 Ssu4g3376 4 84174086 84178882 PCT