Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3375 ATGTCGTCAAAGAAGATCCCAAAATCCCTTCGAGACTACCTCTCCAAGATTAAAACCCCCCAACGTTCACAAATCCAATTACCCTCTAAGAAATGGATCCTCATGGGGTGCAAGCACCCCAGAACTCCTTCTCTCGAcatagacaaaataaaaaacacaccCTATGCCACcgccaacaacaacaacatcaaagACGAGGAAGCCATGTTAGCCGACATCGACCGTTTCCTCTTCGAGAATTTCAAGTCTTTATTCCTCGAAGACCGTGACGAAACCGCCAACAACAACAACCGCAGAGAAGAAAAGTCTCCGAAACTAAGCCCCATCAGGTTCGACTCTTCTAGAAGGTACGAGGAGTCGCCGCCGAACCTCTTCATGGAGACGACCACCGAAGCGGGGTCCAGCTCCGCCGTGTCGTCGTCGGGAACCGAGGGCGCGGAGGAACAGACGGTGGTTCCCGGCAACTGCGTGGTGGTGCTGGCGAACTCGGCGAGCCCCGGCGAGGATTTCCGGCGATCCATGGAGGGAGTGGTGGAGGCGAGGCTGAGGAACTGTGAGAAGGTGGATTGGGACTTCATGGAGGAGCTTCTCTTCTGTCACATGAACCTGAACCAGAAGAAGGCGCACAAGTTCATTCTCAGCGCCTTCGTCGACGTCGTCACCGCCATGCGCCGCCCGCCGGAGATGGCTCCGGCGAAGCCCAAGCCGCGGAGCGTTCGAACTGTTAGGATCGGAAGGGAGGTGCGGAAGAAGACAAAGGAATACTTAGAATTTGGGCCGCGGTAA 786 0.528 MSSKKIPKSLRDYLSKIKTPQRSQIQLPSKKWILMGCKHPRTPSLDIDKIKNTPYATANNNNIKDEEAMLADIDRFLFENFKSLFLEDRDETANNNNRREEKSPKLSPIRFDSSRRYEESPPNLFMETTTEAGSSSAVSSSGTEGAEEQTVVPGNCVVVLANSASPGEDFRRSMEGVVEARLRNCEKVDWDFMEELLFCHMNLNQKKAHKFILSAFVDVVTAMRRPPEMAPAKPKPRSVRTVRIGREVRKKTKEYLEFGPR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3375 261 Pfam Transcriptional repressor, ovate 163 223 IPR006458 -
Ssu4g3375 261 MobiDBLite consensus disorder prediction 123 148 - -
Ssu4g3375 261 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 3 243 - -
Ssu4g3375 261 ProSiteProfiles OVATE domain profile. 159 222 IPR006458 -
Ssu4g3375 261 MobiDBLite consensus disorder prediction 92 117 - -
Ssu4g3375 261 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 243 IPR038933 GO:0045892
Ssu4g3375 261 MobiDBLite consensus disorder prediction 92 148 - -
Ssu4g3375 261 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 157 223 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3375 Ssu-Chr4 84162102 84162887 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu4g3375 Ovate 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3375 - - gmx:100777653 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3375 4 84162102 84162887 Ssu4g3375 4 84162102 84162887 ECH
Ssu8g0191 8 2863115 2863933 Ssu4g3375 4 84162102 84162887 PCT