Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3365 ATGGATTTCTGGCCAGAATTTCTTGCTAGCAGTTCGGGAAGAGAGTTTGTAGCAGGTGGCCTTGGAGGCACTGCTGGTATAATCTCTGGTTATCCACTAGATACTCTCCGCATCAGACTACAGAACACAAAAAATGGCTCTGCCTTCACCATTCTTAGACACATGGTGTCCAGGGAAGGACCAGCTTCTCTGTACCGTGGCATGGGCGCACCATTAGCCTCCGTTACTTTTCAGAATGCAACGGTTTTCCAAACGTACGCAGTTCTGTCAAGGGCATTTGACTCATCTGTTTCTGCTAAAGACCCTCCTTCCTACAAGGATGTTGCTTTAGGAGGAGTTGGTACCGGAGCTCTCCAAAGTCTATTACTATCCCCTGTAGAGTTGATTAAAGTTCGACTTCAGCTGCAGAACGCGGGCCAGATGACAGAATCCGGAAAAGGTCCTGTGAGGCTCGCTAAAAATATATGGAGGAAAGAAGGCCTTCGAGGCATCTATCGAGGACTTGGCGTCACTGTGATGAGGGACGCACCTGCTCATGGTTTATACTTCTGGACATATGAATACATGAGGGAACAATTTCACCCAGGTTGCAGGAGAAGTGGTGAAGAAAGCTTGAATACTATGTTAATAGCGGGAGGATTAGCTGGGGTGGCGAGTTGGATTAGTTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAGGCTCAAACACCCTCTTCTCTCAAGTACAAAGGCATTTTAGATTGCTTCAAAAAGAGCATTAGTGAAGAAGGATTCGGCGTGCTGTGGCGGGGTTTAGGAACTGCAGTTGCCAGAGCGTTCCTAGTAAATGGCGCCATATTTTCTGCTTATGAGTTTGCACTAAGATTACTGTTTAACAATGGAAGTATTCAAATGCAGGAAACAATTTAG 912 0.4594 MDFWPEFLASSSGREFVAGGLGGTAGIISGYPLDTLRIRLQNTKNGSAFTILRHMVSREGPASLYRGMGAPLASVTFQNATVFQTYAVLSRAFDSSVSAKDPPSYKDVALGGVGTGALQSLLLSPVELIKVRLQLQNAGQMTESGKGPVRLAKNIWRKEGLRGIYRGLGVTVMRDAPAHGLYFWTYEYMREQFHPGCRRSGEESLNTMLIAGGLAGVASWISCYPFDVVKTRLQAQTPSSLKYKGILDCFKKSISEEGFGVLWRGLGTAVARAFLVNGAIFSAYEFALRLLFNNGSIQMQETI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3365 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Ssu4g3365 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Ssu4g3365 303 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Ssu4g3365 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Ssu4g3365 303 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Ssu4g3365 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Ssu4g3365 303 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 293 - -
Ssu4g3365 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Ssu4g3365 303 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Ssu4g3365 303 Gene3D Mitochondrial carrier domain 13 300 IPR023395 -
Ssu4g3365 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 293 - -
Ssu4g3365 303 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Ssu4g3365 303 Pfam Mitochondrial carrier protein 12 93 IPR018108 -
Ssu4g3365 303 Pfam Mitochondrial carrier protein 110 193 IPR018108 -
Ssu4g3365 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3365 Ssu-Chr4 84067661 84069717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3365 1 294 Antiporters AT1G79900 70.847 7.99e-146 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3365 K15109 - gmx:100812056 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3365 4 84067661 84069717 Ssu4g3365 4 84067661 84069717 ECH