Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3360 ATGGGGAAGGGAACGGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACGCTCTGTGTGAGGTGTGGCCGCCGCAGCTTCCACCTCCAGAAGAGTCGTTGCGCCGCGTGCGCTTTCCCCGCTGCACGCAAGAGGAAATATAACTGGAGCGTGAAGGCCATTCGGAGAAAGACCACTGGGACTGGTAGGATGAGGTACCGAAGCTGCACCCAGGAAGAGGGGATCCGCTGCCACTGCCTAAGCTGGATACAAAAGGAAAACCTTCTGGGGGGCCTAAACTGTTATACTTTTGTGTTATCTCACACGGaccaaaaagggaaagaaaaggcTTCGGCATACGCCATGTTTCTCAAGGATGAAACAACAGTATCCGAATTCTGGTATCAAAACTTGGTTTTGTTGCGAGACCAAACCAGGAGCTTTAAGCACTATTATGTCCGAATGGTTAATGACCTCACCAATAATCCATTTAATAAGAGCTTTCTCACAATCGATGGATCACTTGCTAGAGCGAGCCATCCTGGCAATCAGGCACAGTTATGTCTATAG 549 0.4809 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTGTGRMRYRSCTQEEGIRCHCLSWIQKENLLGGLNCYTFVLSHTDQKGKEKASAYAMFLKDETTVSEFWYQNLVLLRDQTRSFKHYYVRMVNDLTNNPFNKSFLTIDGSLARASHPGNQAQLCL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3360 182 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Ssu4g3360 182 Gene3D - 1 74 IPR011331 GO:0003735|GO:0005840|GO:0006412
Ssu4g3360 182 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Ssu4g3360 182 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Ssu4g3360 182 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Ssu4g3360 182 PANTHER BNAA02G30880D PROTEIN 1 80 - -
Ssu4g3360 182 PANTHER 60S RIBOSOMAL PROTEIN L37 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3360 Ssu-Chr4 84032375 84035206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3360 1 66 Cytoplasmic Ribosomal Protein Gene Family AT1G15250 92.424 1.56e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3360 K02922 - csv:101221537 143.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3360 4 84032375 84035206 Ssu4g3360 4 84032375 84035206 ECH