Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3357 ATGTCGTCTCCGTCGCCGGCGACTTCTCCTGACACTAACTCCACCGCCTCTCCTCCTTCGCCGGGGACCTCTCCCGCAACTAACTCCACTGTCTCCCCTCCTCCACCTCCCGCCACCATCAATGACACCGCTTCTCCTCCGTCGCCGGCGGTCGCCGACATTCCGCCTAATCCCGATAACGGGTTGGCGAGGAGTACGTTGAACGGAATAATTATAGGGACCGTGTTAGGTTCAGTAGGTATGCTTATAATTGGTGGCATTTTCTTCTGCTTTTATAGAAATTGGAAAAGGAAGCGAAGCCAGAACAACTGTTCGCAACCGCCACAACCTAAAGCTGAGACGACTGGTGGCACACTTCAGCATTGGCAAGACAGTGTTCCTCCAACGACAGATGGTAAAGTAGGCTTGCCGCCCAAGCCTCCTCCTGGGGCTTTAGTGAATCAGCAACAGTCATCCGCTGGGCTCCCAACACCTGCTGTGAATTCTTCAAGCACCAGCAGTAGTTTGGGTTCTGAGAAGAAGAAACCATACATTTCCCCATCTCCTGGCATTTCCTTGTCACTATCTCAAACTCAAAGCACTTTTTCATATGACGAATTAGCTATGGCAACGGATGGATTCTCCAAATCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTACACAAAGGAGTTCTCCCAAATGGGAAAGTTGTTGCGGTTAAGCAGTTGAAATCTGAGAGTAGACAGGGGGAGCGTGAGTTCCATGCAGAAGTCGAGGTCATTAGCCGTGTGCATCACAGACATCTTGTTTCCCTAGTTGGATACTGCATCTCAGGCCGCCGGAGGATGCTTGTCTACGAGTATGTGCCCAATAATACACTAGAATTTCATTTGCATGGAAAGGACAGACCATCTATGGACTGGTCAACAAGGATGAAGATTGCTACAGGATCTGCAAAAGGATTGGCATATCTGCATGAGGACTGTAATCCCAAAATCATACACCGTGACATCAAGGCATCTAACATCCTTcttgataataattttgaagctaagGTTGCAGATTTTGGACTAGCAAAATTTTCATCAGACACAGAAACCCATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTCACTGAAAAGTCAGACGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATTACTGGACGAAAACCTGTCGATAAAACTCAACCCTTCATAGATGACAGCATGGTTGAATGGGCAAGGCCTTTACTGTCTCAAGCTTTGGAAAATGGCAACTTTAATGGACTTGTTGATCCAAAGTTGCAGACAAATTACAATCTTGATGAGCTGATCCGAATGACTACTTGTGCTGCAACTTGTGTGCGCAATTCAGCCAGGCTCCGACCTCGAATGAGCCAGGTTGTTCGAGCTCTGGAAGGAAATATTTCTCTAGAAGATCTAAATGAGGGGGGCACACCTGGACACAGCAGAGTTTTTGGTTCCTTTGAGAGTTCTAGTTATGATAGTGTCCAATACAGTGAAGACCTAAAGAAGTTCAAGAAGTTGGCATTGGAAAGCCAAGAGCAAGGTATTAGTGAGTACAGTGGTCCCAGCAGTGAGTATGGCCAACATCCATCTGTCTCGACCAGTTCGGGCCAGCAAAATACACAGGAAATGGAAATGGGCAATGTGAAGGGTAGCAGCCATGATTCTGGGATGAGCTCTTGA 1734 0.4654 MSSPSPATSPDTNSTASPPSPGTSPATNSTVSPPPPPATINDTASPPSPAVADIPPNPDNGLARSTLNGIIIGTVLGSVGMLIIGGIFFCFYRNWKRKRSQNNCSQPPQPKAETTGGTLQHWQDSVPPTTDGKVGLPPKPPPGALVNQQQSSAGLPTPAVNSSSTSSSLGSEKKKPYISPSPGISLSLSQTQSTFSYDELAMATDGFSKSNLLGQGGFGYVHKGVLPNGKVVAVKQLKSESRQGEREFHAEVEVISRVHHRHLVSLVGYCISGRRRMLVYEYVPNNTLEFHLHGKDRPSMDWSTRMKIATGSAKGLAYLHEDCNPKIIHRDIKASNILLDNNFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTQPFIDDSMVEWARPLLSQALENGNFNGLVDPKLQTNYNLDELIRMTTCAATCVRNSARLRPRMSQVVRALEGNISLEDLNEGGTPGHSRVFGSFESSSYDSVQYSEDLKKFKKLALESQEQGISEYSGPSSEYGQHPSVSTSSGQQNTQEMEMGNVKGSSHDSGMSS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3357 577 Gene3D Phosphorylase Kinase; domain 1 173 282 - -
Ssu4g3357 577 MobiDBLite consensus disorder prediction 1 57 - -
Ssu4g3357 577 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 553 - -
Ssu4g3357 577 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g3357 577 SUPERFAMILY Protein kinase-like (PK-like) 184 480 IPR011009 -
Ssu4g3357 577 ProSiteProfiles Protein kinase domain profile. 207 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3357 577 MobiDBLite consensus disorder prediction 145 174 - -
Ssu4g3357 577 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 553 - -
Ssu4g3357 577 Pfam Protein tyrosine and serine/threonine kinase 210 479 IPR001245 GO:0004672|GO:0006468
Ssu4g3357 577 SMART serkin_6 207 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3357 577 MobiDBLite consensus disorder prediction 100 127 - -
Ssu4g3357 577 MobiDBLite consensus disorder prediction 100 182 - -
Ssu4g3357 577 MobiDBLite consensus disorder prediction 28 54 - -
Ssu4g3357 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 327 339 IPR008271 GO:0004672|GO:0006468
Ssu4g3357 577 MobiDBLite consensus disorder prediction 529 577 - -
Ssu4g3357 577 Gene3D Transferase(Phosphotransferase) domain 1 283 491 - -
Ssu4g3357 577 ProSitePatterns Protein kinases ATP-binding region signature. 213 235 IPR017441 GO:0005524
Ssu4g3357 577 MobiDBLite consensus disorder prediction 530 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3357 Ssu-Chr4 83992594 83996853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3357 28 541 Trihelix Transcription Factor Family AT1G70460 50.095 3.29e-157 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu4g3357 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3357 - - ccaj:109808169 954.51