Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3349 ATGGGCATGAACATGTCCAACAAACCACCTCACACCAAAGACTTGTTTTCCTCTCCAGCTCTCTCTCTTAGCCTAGCCGGGATTTTCCGGCATGCTGGGGAGGCGGCGGAGACATCCGGCATGGAGATGGCCGGCGATGATGTCCGGCGAGAGGACACTGTTGAGATTAGCAGCGACAACTCAGGACCCGTGAGATCCAGGTCAGAAGATGATTTTGATGGAGAAGGTGCTCATgaggatgaagatgaagataatgatgatgatgatgatggggATGGTGACAAGAAgcggaagaagaagaagaggaagtaTCACAGGCACACCGCTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAACAACTCAGCAAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACGCAAATCAAGGCAATACAAGAGCGCCATGAAAATTCATTATTGAAGACAGAATTAGAGAAACTAAGGGAGGAAAATAAGGCCATGCGGGAGACCATAAATAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTAGCATAGATGGCTCCTTGTCCACTGAAAAAAAACAACTTCGTATTGAAAATGCCAAACTCAAAGCTGaggTAGAGAAGCTCCGAACAACTTTAGGGAAATGCTCACCAAGGACAACGTCCCCTTCATCTTCTACTGGCCATGATGTGGAAGAGAATAGAAGCTCTTCGGATTTTTACAATGGAATTTTTAGGCTCGAGAAATCAAGGATAATGGATATAGTAAACATAGCAACGGAGGAGCTCATAAAGATGGCAAATATGGGGGAACCATTATGGGTTCGTAGCGTTGAGACGGGTCGCGAAATACTTAACTACGATGAATATGTGAAGGAGTTCACAGTTGAAAATTCATGCACTGAAAGGCCAAAGAGATTCATCGAAGCCTCAAGAGAAACTGGGGTTGTTTTTATGGATCTCCCACAGCTTGTCCAAAGTTTTCTAGATGTGAATCAATGGAAAGAAATGTTTCCGTGCTTAATATCAAAGGCAGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCTAACAGGAAAGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGCTGAGAGCTGAACAGTGGGCAATAGTTGATGTGTCCATAGACAAAGTAGAAGACAACATTGACTCATCCCTTGTGAAATGCAGAAAACGCCCATCTGGTTGTATTATTGAGGATAAGTCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAAAAGAGCACAATTCACACATTGTATCGAACCATTGTGAACAGTGGTCTAGCTTTTGGGGCAAGGCACTGGATAACAACACTACAACTTCAATGCGAACGTCTAGTTTTCTACATGGCAACAAATGTTCCCATGAGGGATTCAACTGGTGTTGCCACGTTGGCTGGGAGGAAAAGCATTTTGAAGCTGGCACAAAGAATGACACGGAGTTTCTGCCATGCAGCTGGCGCATCAAGTTTCCATACATGGACCAAGGTCACAAGTAAAACAGGAGAAGACATAAGGATTAGCACTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCTTGTCAGCTGCTTCATCTGTATGGCTTCCTGTCTCTCCTAATGTTCTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATCATGTCCAATGGTGGGTCAGTGCTGTCCATTGCAAATTTAGCTAAAGGAAAAGACCGAGGCAATGTTGTAAACGTCCAAAAAATACAATCAAAAGATAACAGTGTGTGGGTATTGCAAGATAGCTGCACAAGTGCTTATGAGTCTATGGTGGTATATGCTCCTGTGGACTTTGCTGGTATCCAATCTGTGCTGACAGGATGTGATTCAAGTAATCTTGCCATATTGCCGTCAGGATTCGCAATTCTTCCTGATGGGATTGAGGCAAGGCCATTGGTGATTACATCAAGGcaagaagaaaaatacacaGAAGGAGGATCTTTACTTACAATGGCATTTCAGATCCTTGCCAACGCTTCTCCAACAGCCAAGTTAACAATGGAGTTTGTGGAATCCGTCAATAATCTTGTGTCTTGTACATTAAGAAATATTAGAACAAGTTTTCAGTGTGAAGATGGTTAG 2268 0.4264 MGMNMSNKPPHTKDLFSSPALSLSLAGIFRHAGEAAETSGMEMAGDDVRREDTVEISSDNSGPVRSRSEDDFDGEGAHEDEDEDNDDDDDGDGDKKRKKKKRKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTELEKLREENKAMRETINKSCCPNCGMVTASIDGSLSTEKKQLRIENAKLKAEVEKLRTTLGKCSPRTTSPSSSTGHDVEENRSSSDFYNGIFRLEKSRIMDIVNIATEELIKMANMGEPLWVRSVETGREILNYDEYVKEFTVENSCTERPKRFIEASRETGVVFMDLPQLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGSNRKGAVQLMFAELQMLTPMVPTREVYFVRCCKQLRAEQWAIVDVSIDKVEDNIDSSLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTLYRTIVNSGLAFGARHWITTLQLQCERLVFYMATNVPMRDSTGVATLAGRKSILKLAQRMTRSFCHAAGASSFHTWTKVTSKTGEDIRISTRKNLNDPGEPLGVILSAASSVWLPVSPNVLFDFLRDEARRSEWDIMSNGGSVLSIANLAKGKDRGNVVNVQKIQSKDNSVWVLQDSCTSAYESMVVYAPVDFAGIQSVLTGCDSSNLAILPSGFAILPDGIEARPLVITSRQEEKYTEGGSLLTMAFQILANASPTAKLTMEFVESVNNLVSCTLRNIRTSFQCEDG 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3349 755 SMART START_1 270 494 IPR002913 GO:0008289
Ssu4g3349 755 MobiDBLite consensus disorder prediction 36 111 - -
Ssu4g3349 755 CDD START_ArGLABRA2_like 265 493 - -
Ssu4g3349 755 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
Ssu4g3349 755 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 752 IPR042160 -
Ssu4g3349 755 Pfam START domain 275 494 IPR002913 GO:0008289
Ssu4g3349 755 Gene3D - 88 171 - -
Ssu4g3349 755 SUPERFAMILY Homeodomain-like 91 159 IPR009057 -
Ssu4g3349 755 SUPERFAMILY Bet v1-like 264 494 - -
Ssu4g3349 755 MobiDBLite consensus disorder prediction 74 90 - -
Ssu4g3349 755 Pfam Homeodomain 101 156 IPR001356 GO:0003677
Ssu4g3349 755 Coils Coil 208 228 - -
Ssu4g3349 755 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 14 752 - -
Ssu4g3349 755 MobiDBLite consensus disorder prediction 230 250 - -
Ssu4g3349 755 SMART HOX_1 100 162 IPR001356 GO:0003677
Ssu4g3349 755 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Ssu4g3349 755 CDD homeodomain 105 156 IPR001356 GO:0003677
Ssu4g3349 755 Gene3D - 305 492 IPR023393 -
Ssu4g3349 755 SUPERFAMILY Bet v1-like 523 744 - -
Ssu4g3349 755 ProSiteProfiles START domain profile. 261 497 IPR002913 GO:0008289
Ssu4g3349 755 Coils Coil 157 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3349 Ssu-Chr4 83936735 83941711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3349 56 754 Homeobox Transcription Factor Family AT1G79840 64.823 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu4g3349 START 9e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3349 K09338 - gmx:100806193 1275.38