Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3345 ATGAGTCGCTCATTGAAGGCTTTCAACAAACACCTCACTCTCCTCCCTTTTCACCAACGCACTGCTTCCCATGCCTTCATAGCTTCctcctctctccctctttttCCGCATCTTCCTGCTGTTGCCTACCACAGGTTCTCTTTCTCTCAGTTTCGCCCACTCTCTTCATCTGCACCTGCTACATTAATGGAGGTGGTCAAAGCAATTGCTAAGCAAGAACCTGCAGCTCATGACAGTGTTGCTATCAGGGCTGATCAGAAGAGTTATAGTTACAAGCAACTCTTCTCATCAGCACAGAAGATATCTAATCTCTTGTGTGGCGGTGATGTGCAAATAGAAAATCTCAGTGGAGCTCGAATAGGAATTATAGCCAAACCCTCTGCTGAATTTGTTGCTGGAATACTTGGGATTTGGCTTAGTGGAGGAGTTGCTGTTCCGCTTGCAATCAGCTATCCAGAAGTAGAGCTCTTGTATGTGATTAATAATTCGGATATATCTGCAATACTGAGTACTGAAGATCATAGTGAATTAATGCAAAGCGTAGCCAATAAAAGCTCTTCTCAGTTTTTTCATCTTCCACCTGTTCTCAACAAGTCTTCAGAGAAAAGCAGAGATGAACATTCACAGAATGGGAAAATTGATGCAGACGGAATTTTCTTGGATAATATTGGAAGATCAAGCGAAGATCCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCATTTCCCAGgtccaaacttTGACAAAAGCGTGGGAGTACACATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATCATGTTCACGGGTTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACGGTTGAGTTTTTGCCAAAATTTAGTGTGAGGGGAGTTTGGCAGAGATGGCGTGAGTCATATCCAACTGATGGTTCTATGGCTGACGATGCTATAACTGTGTTCACTGGAGTTCCAACTATCTATGTCCGATTGATACAAGGTTATCATGCAATGGATCCAGAGCTACAAGCTGCTTCAGCATCTGCGGCAAAGAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTTCCTCAACCTGTTATGGAAGAATGGGAAGCCATCACTGGGCATTGCTTATTGGAACGATATGGCATGACTGAATTTGTTATGGCATTGTCAAATCCATTGAAAGGTGAGCGCAAGCCGGGAACTGTTGGCAAACCATTTCCTGGTATACAGGTCAAGATTATTTCAGATGAAGACAGTGAGAATGAAAATACTGGAATCGGTGAGCTTTGTGTTAAAAGCACTTCGTTGTTTAAAGAATATTGGAAACTTCCTAAGGTAACGAAGGAATCATTTACTGATGATGGATTCTTTAAGACCGGAGATGCAGTTACTACAGATGAAGATGGATATTACATCATTCTAGGACGTACTAATGCTGATATAATCAAGGCTGGTGGCTATAAGCTGTCTGCATTAGAAATTGAATCAGTTATGCTACAGCATCCAGCTGTCTCAGAATGTTGCGTTTTAGGCTTACCAGACAAAGACTATGGAGAGATTGTTGGTGCAATCATTGTGCCACAGGTTGATGTTAAACGGAAGCGAGATCAAGAGTCAAAGCCTGTTCTAAGCCTAGAAGAATTATCCACCTGGGCCAAAGACAAAATTGCACCTTACAAGATTCCAACAAAACTAATCGTGTGGGACAAACTCCCCCGTAATGCCATGGGGAAGgtaaataaaaaagagcTGAAGAAGATGCTGGCTTCAGAACAATGA 1818 0.418 MSRSLKAFNKHLTLLPFHQRTASHAFIASSSLPLFPHLPAVAYHRFSFSQFRPLSSSAPATLMEVVKAIAKQEPAAHDSVAIRADQKSYSYKQLFSSAQKISNLLCGGDVQIENLSGARIGIIAKPSAEFVAGILGIWLSGGVAVPLAISYPEVELLYVINNSDISAILSTEDHSELMQSVANKSSSQFFHLPPVLNKSSEKSRDEHSQNGKIDADGIFLDNIGRSSEDPALILYTSGTTGKPKGVVHTHRSIISQVQTLTKAWEYTSADQFLHCLPLHHVHGFFNGLMAPLYAGSTVEFLPKFSVRGVWQRWRESYPTDGSMADDAITVFTGVPTIYVRLIQGYHAMDPELQAASASAAKNLRLMMCGSSALPQPVMEEWEAITGHCLLERYGMTEFVMALSNPLKGERKPGTVGKPFPGIQVKIISDEDSENENTGIGELCVKSTSLFKEYWKLPKVTKESFTDDGFFKTGDAVTTDEDGYYIILGRTNADIIKAGGYKLSALEIESVMLQHPAVSECCVLGLPDKDYGEIVGAIIVPQVDVKRKRDQESKPVLSLEELSTWAKDKIAPYKIPTKLIVWDKLPRNAMGKVNKKELKKMLASEQ 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3345 605 CDD MCS 78 599 - -
Ssu4g3345 605 Pfam AMP-binding enzyme C-terminal domain 506 591 IPR025110 -
Ssu4g3345 605 PANTHER ACYL-COA SYNTHETASE 45 604 - -
Ssu4g3345 605 Pfam AMP-binding enzyme 76 495 IPR000873 -
Ssu4g3345 605 ProSitePatterns Putative AMP-binding domain signature. 233 244 IPR020845 -
Ssu4g3345 605 SUPERFAMILY Acetyl-CoA synthetase-like 47 603 - -
Ssu4g3345 605 PANTHER MALONATE--COA LIGASE-LIKE 45 604 - -
Ssu4g3345 605 Gene3D - 492 605 IPR045851 -
Ssu4g3345 605 Gene3D - 14 489 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3345 Ssu-Chr4 83873714 83881989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3345 228 603 Monolignol Biosynthesis Gene Families AT4G19010 28.866 4.95e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3345 K18660 - gmx:100813324 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3345 4 83873714 83881989 Ssu4g3345 4 83873714 83881989 ECH