Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3338 ATGATGGCTGGGAACCCTAACTGGTGGACTATGCATCCACCATCTTTGATCCCTCCTCAGTATGTGCTTGGATCTTCTTCAATTCCTTTTAATTCTTCTACACAAAACCCAGAGCCCCCTCAGTCATTGAGCCAACTTCTTTTCACTGGTTTACCaggagaggaagagagagtTGCATTCAGTCATTTTCAATCAAAAAAGTTGGATGGCTGGGATGAACATATGCTTAATCCATCCCCCATAATGCCTATGGTTGATGTAATAAAGCAAGAGGTTTCCCAAAGTGGCAACTTATATCACCATGGACATGATCAGGAATTTCAGGTTTCTGGGGCACCTTGGTCACATATGGTGCCAGTTTCTTCTTCCCCTAGGTCTAGTGTCGCTAGCTTCAACAGTAATAATTTATTGGATTTCACTTATAACAAGGCAGATCATAGGAGGAACCAACTACCAGATCACACATCCGAGTGTAATAGCACAGCCGCTGCTGGAGTTTATAAGAAGACTAAGAGTCAACCATCTTCAAGCCAACCACCTCTCAAGGTGAGAAAGGAGAAGCTAGGTGATAGAATAACAGCCCTTCACCAGTTAGTTTCCCCATTCGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGGCACTCAGTTCTCCTTACTTGGGCTCAAAAAACATGAGGAATCCACAGTCTGTACACGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGAATGACAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAggATGCAAAAGATAAGCCAAAGGACTTGAGGAGTAGAGGGCTGTGCTTAGTTCCTGTGTCTTGTACCCAACATGTTGGAAATGAAAATGGAGCTGATTACTGGGCACCTGCATATGGCAGTggattttaa 948 0.4262 MMAGNPNWWTMHPPSLIPPQYVLGSSSIPFNSSTQNPEPPQSLSQLLFTGLPGEEERVAFSHFQSKKLDGWDEHMLNPSPIMPMVDVIKQEVSQSGNLYHHGHDQEFQVSGAPWSHMVPVSSSPRSSVASFNSNNLLDFTYNKADHRRNQLPDHTSECNSTAAAGVYKKTKSQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGSKNMRNPQSVHGERNSVFPEDPGQLLNDNGLKRKGAPNQDAKDKPKDLRSRGLCLVPVSCTQHVGNENGADYWAPAYGSGF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3338 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Ssu4g3338 315 PANTHER OS05G0228400 PROTEIN 19 302 - -
Ssu4g3338 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 234 IPR036638 GO:0046983
Ssu4g3338 315 CDD bHLH_AtbHLH_like 182 229 IPR045239 -
Ssu4g3338 315 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 302 - -
Ssu4g3338 315 Gene3D - 182 242 IPR036638 GO:0046983
Ssu4g3338 315 MobiDBLite consensus disorder prediction 238 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3338 Ssu-Chr4 83781947 83784577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3338 53 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 42.975 2.31e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3338 - - gmx:100802121 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3338 4 83781947 83784577 Ssu4g3338 4 83781947 83784577 ECH