Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3335 ATGTCTACACCGTTGGAACATGATTACATAGGCTTAGCAGAGGCTCCATCCATGGAGAAAAGCTGTGATAAGATATCCTCTTCCGTTTCCTCCAACCTCTCTTCTGAGGAAGAGAACAGCTCATCTCTGAACTTCAAGGAGACGGAACTGAGGCTTGGCCTGCCTGGTTGTGAGTCTCCTGAGAGCAAATCAGGAGCTGCTGCAGGGATCTCTCTTTTTGGCAAGGATTTGCAGAACAAGAACAATGGCTATTCTGCTTCTCCAACTCCTTCCAAGAACCTTAAGAGGGGCTTCTCTGATGCCATtagctcttcttcttcttctggcAAATGGATTTTCTCAGCGAGTGATGCAGCAACTGAGGCAGATTTGGGAAGTGCTTCTAATACTTCTGCACGAAGCAACAAAGCGGTTGGTATGGTTCCTCACCCTGAGAAGCCGGCTCAGGTTGCTGCAACAAATGACCATGTTACTGCTCCTGCTGTAAAAGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACACGATGGCTTATAATTTGGCAAAAAACAATAACGAAGCTGAGGAGAAATCAGGAGTTGGTTGTCTTTATGTAAAGGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAAAACCTACAGCAACTATATTGAACTTTCTTCAGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATACAGTTCTCGTGCACTTCCTGGGAAAGATGGATTAAGTGAGATCGCTTTCAGGGATCTTCTTCATGGCTCTGAATATGTTCTTACATATGAAGATAAGGATGGAGATTGGATGCTCGTGGGTGATGTCCCTTGGGAGATGTTCACTGAGTCGTGTAAGAAACTAAGGATAATGAAAGGCTCTGAGGCAATCGGGCTAGCTCCAAGGGTCACGGGAAAATCTAGGAGCCAAAACTAG 960 0.4437 MSTPLEHDYIGLAEAPSMEKSCDKISSSVSSNLSSEEENSSSLNFKETELRLGLPGCESPESKSGAAAGISLFGKDLQNKNNGYSASPTPSKNLKRGFSDAISSSSSSGKWIFSASDAATEADLGSASNTSARSNKAVGMVPHPEKPAQVAATNDHVTAPAVKAQVVGWPPIRSFRKNTMAYNLAKNNNEAEEKSGVGCLYVKVSMDGAPYLRKVDLKTYSNYIELSSALEKMFSCFTIGQYSSRALPGKDGLSEIAFRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKKLRIMKGSEAIGLAPRVTGKSRSQN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3335 319 Pfam AUX/IAA family 47 310 IPR033389 -
Ssu4g3335 319 MobiDBLite consensus disorder prediction 18 46 - -
Ssu4g3335 319 MobiDBLite consensus disorder prediction 21 46 - -
Ssu4g3335 319 PANTHER AUXIN-RESPONSIVE PROTEIN 5 311 - -
Ssu4g3335 319 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 311 IPR003311 GO:0005634|GO:0006355
Ssu4g3335 319 SUPERFAMILY CAD & PB1 domains 199 300 - -
Ssu4g3335 319 Gene3D - 193 313 - -
Ssu4g3335 319 ProSiteProfiles PB1 domain profile. 199 301 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3335 Ssu-Chr4 83744826 83747792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3335 203 309 B3 DNA Binding Superfamily AT4G23980 30.841 3.21e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu4g3335 AUX_IAA 3.2e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3335 K14484 - gmx:100804782 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3335 4 83744826 83747792 Ssu4g3335 4 83744826 83747792 ECH