Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3334 ATGGCTGGCATCGCATTCGGACGCTTTGATGATTCTTTCAGTTTAAGCTCAATCAAGGCTTATATTGCTGAGTTCATATCAACCTTGCTCTTTGTTTTTGCCGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCACTTGATCCTGCTGGGTTAGTAGCAGTTGCTATTTGCCATGGTTTTGCTCTCTTCGTTGCAGTTTCAGTTGGTGCCAACATCTCTGGTGGCCATGTCAACCCTGCTGTGAGTTTTGGATTGGCTCTTGGTGGCCACATCACCATCCTCACTGGCATCTTCTACTGGATTGCACAGCTTCTTGGCTCCATTGTGGCATGTTTTCTTCTCCACTATGTCACAGGAGGCTTGGCAACTCCAATCCACAGTGTGGCTTCCGGGGTTGGAGCCGTTGAAGCAGTTGTTACGGAGATCATCATCACATTTGGTTTGGTGTACACTGTGTATGCCACGGCAGCTGACCCCAAGAAGGGCTCATTGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAATATCTTGGCAGCAGGCCCATTCTCCGGTGGGTCAATGAACCCAGCACGCTCCTTTGGGCCTGCAGTTGTTAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTTATTGGTGGTGGTTTGGCTGGCCTGATCTACGGCAATGTGTTCATTCGCTCTGACCATGCACCTCTTTCCAGTGAATTTTGA 747 0.494 MAGIAFGRFDDSFSLSSIKAYIAEFISTLLFVFAGVGSAIAYGKLTSDAALDPAGLVAVAICHGFALFVAVSVGANISGGHVNPAVSFGLALGGHITILTGIFYWIAQLLGSIVACFLLHYVTGGLATPIHSVASGVGAVEAVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYGNVFIRSDHAPLSSEF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3334 248 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Ssu4g3334 248 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Ssu4g3334 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 PANTHER MIP PROTEIN 1 248 - -
Ssu4g3334 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g3334 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Ssu4g3334 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3334 Ssu-Chr4 83738621 83739959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3334 1 246 Major Intrinsic Protein MIP AT3G16240 81.781 1.29e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3334 K09873 - gmx:100306092 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3334 4 83738621 83739959 Ssu4g3334 4 83738621 83739959 ECH