Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3327 ATGACACAAACaacctcttcctcctcctccacaTCTCCTCCACCCTCACCCTCACATTCCACCCCAAAAGCCCAGGCCCAAAAACAGAGCAAGAGGCCCAGAGACTGCAGCAAGCACCCGGTGTACCACGGCGTGCGGAAGCGCAACTGGGGCAAATGGGTCTCCGAAATCCGCGAGCCGCGCAAGAAGTCCCGCATCTGGCTCGGAACCTTCGCGACTCCAGAAATGGCGGCGCGGGCCCACGACGTGGCGGCCCTCAGCATCAAGGGCCAGTCAGCAATTCTCAACTTTCCCGAAATTGCAGAGCTGCTCCCCCGCCCCGCCACGTGCTCCCCGAGTGACATCCAAGCCGCGGCCACAGCCGCAGCGGCGATGGTTAAGTTTGACCCGGCGGTGCAGTCCTCGGACTCGGAGGAGTCTTCGGAGCTGAGCGAGATTGTCGAGCTTCCCAACATCGAAGACAGGTTTGACTCCTCCGCAACCGAGTTCGTGCTGCTTGACGTTGTCGACAGTTGGGTGTTTCCGCCAATGGGGTCAGAGGGAATCGAGTTCTGTGCCGCTTTTTCTGATGAGTTAGTATTTCCGCAATTGAGTTTTATTAACTCTGACTCTGAGATAGAGATACTACCCATTTGGGATTGA 642 0.5576 MTQTTSSSSSTSPPPSPSHSTPKAQAQKQSKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGQSAILNFPEIAELLPRPATCSPSDIQAAATAAAAMVKFDPAVQSSDSEESSELSEIVELPNIEDRFDSSATEFVLLDVVDSWVFPPMGSEGIEFCAAFSDELVFPQLSFINSDSEIEILPIWD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3327 213 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Ssu4g3327 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 190 - -
Ssu4g3327 213 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Ssu4g3327 213 MobiDBLite consensus disorder prediction 1 41 - -
Ssu4g3327 213 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Ssu4g3327 213 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Ssu4g3327 213 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Ssu4g3327 213 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Ssu4g3327 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 190 - -
Ssu4g3327 213 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Ssu4g3327 213 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3327 Ssu-Chr4 83687652 83688293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3327 25 176 AP2-EREBP Transcription Factor Family AT5G11590 54.802 1.22e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g3327 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3327 K09286 - gmx:100804056 322.013