Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3326 ATGGCATCCCTTTTGAGCGTCCTCTGTACTGCTTCGATCGTTGTCTTGGCTTTCATGGATATCCCAGTTGAAGCTGATAGGCAATTCAAAGTGGGTTGGCAGGAACCTGCCCCCAACGACACTGCATTTTATAATCAATGGGCTGCAAGGAACAGCCCCATAAATACATTTGACGATGGGAATAGCACAGTCATTCTTGACAGCCCTGGATTCTTCTACTTCGTCAGTGGAATTGAAGATCATTGCCAGAACGGCGAGAAGTTGATTGTAGAGGTGATGTCGCCACATTCAATTCCAAACTCTCCACCGTCCATTATTTATATTCCACCACAAGGTTTCTCAGCTTTGGCTCCTGCACCTTCTCATAGTCATAGCTCTCGGCTTTCTGCCTCCATCGTGCTTGGTTCAGTCTTTATGGCTCTTTTGACCTGCTTTTAG 438 0.4635 MASLLSVLCTASIVVLAFMDIPVEADRQFKVGWQEPAPNDTAFYNQWAARNSPINTFDDGNSTVILDSPGFFYFVSGIEDHCQNGEKLIVEVMSPHSIPNSPPSIIYIPPQGFSALAPAPSHSHSSRLSASIVLGSVFMALLTCF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3326 145 PANTHER BLUE COPPER PROTEIN 52 144 IPR039391 GO:0009055
Ssu4g3326 145 SUPERFAMILY Cupredoxins 50 93 IPR008972 -
Ssu4g3326 145 Pfam Plastocyanin-like domain 44 85 IPR003245 GO:0009055
Ssu4g3326 145 PANTHER EARLY NODULIN-LIKE PROTEIN 2 52 144 - -
Ssu4g3326 145 ProSiteProfiles Phytocyanin domain profile. 51 94 IPR003245 GO:0009055
Ssu4g3326 145 Gene3D - 48 98 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3326 Ssu-Chr4 83645690 83646612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3326 2 96 Phytocyanin Superfamily AT1G79800 36.154 4.41e-20 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3326 - - gmx:121175141 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3326 4 83645690 83646612 Ssu4g3326 4 83645690 83646612 ECH