Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3323 ATGGAAGCGCCGGAATACTTCGTCGGAGGCTATTTTGGCGCCGGAGGAGCTGAACAATTCTCGCCGCCGGAGAAGCGCCACGCCGACCAGAAACCCGGCGAGCCTTTCGCCATTGACGACCTCCTCGACTTCTCCCAAGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTCGCCGGAAACTCCGCAGACTCCTCCACCGTCACCGCCGTCGACAGCTGCAACTCCTCCATTTCCGGCAGCGACAACCGCTTCGCCGCCGCCATTATCCCTCGCGGCTTCGCCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTATGACGACATGGCGGAACTGGAATGGCTCTCGAACTTCGTGGAAGACTCGTTCTCTGCCGAGGAGGAGCTGAAGACGCTGCAGCTACTCTCCGGCGGCGCCGCCGCATCCACCGCCATTGGCGCCAAACCGCAGACGCCGGAGTCGTCCTCCTCCACCGACACGCTTCCGCCGTTCGCTTCCGACGACACCGCACGAAACGCACCGTTTCTCCACTCGGAAACGCCGCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGCGCCGCGCCGGGGGACTGGTCCACGCGCCTGCTCCACCTGGTGACTCCGACCGACGCGGCGGCGGAACAGAAGCCGCCGCAGGCGAATGCGGCGCCGGCGAAGAAGCGAGAGGGAGCGAATGTGGAGTGCTCGGGACGGAAATGCCTTCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGACCGATGGGACCGAAGACGCTGTGCAACGCGTGCGGCGTGAGGTTCAAGTCCGGGAGGTTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGTCCACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGCTGCAGCGACAGCAGCATCAGCAGTTGTTGAGCCAGAGTTCAATTTTCGGCATATCCAACGGTGGAGATGAGTTCTTGATccgtcatcatcatcaccattgtGGGCCAGATTTTAGACACGTTATTTAG 1056 0.6184 MEAPEYFVGGYFGAGGAEQFSPPEKRHADQKPGEPFAIDDLLDFSQADAIMSDGFFDNVAGNSADSSTVTAVDSCNSSISGSDNRFAAAIIPRGFAGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGGAAASTAIGAKPQTPESSSSTDTLPPFASDDTARNAPFLHSETPLPGKARSKRSRAAPGDWSTRLLHLVTPTDAAAEQKPPQANAAPAKKREGANVECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKELQRQQHQQLLSQSSIFGISNGGDEFLIRHHHHHCGPDFRHVI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3323 351 Pfam GATA zinc finger 243 276 IPR000679 GO:0006355|GO:0043565
Ssu4g3323 351 CDD ZnF_GATA 242 289 IPR000679 GO:0006355|GO:0043565
Ssu4g3323 351 PIRSF Txn_fac_GATA_plant 18 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ssu4g3323 351 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Ssu4g3323 351 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Ssu4g3323 351 MobiDBLite consensus disorder prediction 150 168 - -
Ssu4g3323 351 Gene3D - 238 319 IPR013088 GO:0006355|GO:0008270
Ssu4g3323 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 240 300 - -
Ssu4g3323 351 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Ssu4g3323 351 Coils Coil 301 321 - -
Ssu4g3323 351 SMART GATA_3 237 287 IPR000679 GO:0006355|GO:0043565
Ssu4g3323 351 MobiDBLite consensus disorder prediction 11 33 - -
Ssu4g3323 351 MobiDBLite consensus disorder prediction 146 234 - -
Ssu4g3323 351 PANTHER GATA TRANSCRIPTION FACTOR 9 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3323 Ssu-Chr4 83601551 83602752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3323 34 351 C2C2-Gata Transcription Factor Family AT4G32890 46.061 3.38e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu4g3323 GATA 4.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3323 - - gmx:100776605 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3323 4 83601551 83602752 Ssu4g3323 4 83601551 83602752 ECH