Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3322 ATGTCCTGCAAGGATGGTAGCAAAAACGGAATGGATAACGGGAAGTACGTCCGTTACACGCCTGAGCAGGTTGAAGCCCTCGAGAGGTTCTATCACGATTGCCCCAAACCAAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAGTGCCCCATTCTCTCCCACATCGAGCCCAGGCAAATCAAGGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGGCTGCAAGCTGTGAATAGGAAGTTGACTGCGATGAACAAGCTGCTGATGGAGGAGAATGATAGGCTGCAGAAGCAGGTGTCTCAACTGGTGTATGAAAATGGCTATTTTCGTCAACACACCCAAAATACTACGCAGGCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGTGGTCAGCACGGTTTGACAACTCAACATCCCCCAAGGGATGCGAGTCCTGCAGGgCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTATATATGCAgTTATATGCACCAACCACATTGGCACCTGCTCGAGACTTCTGGTTGTTGCGCTATACTTCTGTTTTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCTAGTGGGTACCTGATTAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGAGTGTGCCGGAAGTGCTACGTCCCCTGTACGAATCATCAACAGTGCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATCTAAGGCAGATTTCGCATGAAGTTTCCCAGTCTAATGTCACTGGGTGGGGTAGACGACCAGTGGCTCTACGAGCTCTTAGTCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGATTTACCGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTAGTGAATTCATCCCCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCGTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCAATGCTATTACAGAATGTGCCCCCAGCCATTCTCCTAAGGTTCCTTCGAGAGCATAGATCAGAATGGGCAGACAACAATATGGATGCTTACACAGCTGCTGCTATTAAAGTTGGCCCTTGCAGCATATCTGGATCTCGTGTTGGAAATTATGGAGGTCAAGTTATACTCCCTCTAGCACATACAATTGAGCATGAGGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGAAGACACAATAATGCCCAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTGCCCTTGATGTTGGCCCCAGTGGAAACCGAGCTTCAAATGAATATGCTGGAAATTCTGGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCTCGCCAATATGTTCGGAGTATCATATCATCGGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGACACCATTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAATGAGGGGAACGAATCTTTGCTCAAATCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGGCATTGCCAGTATTCACTTTCTCGAACCAGGCCGGGCTTGACATGCTGGAGACCACCCTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTTGACGATCATGGACGAAAAATTCTCTTTTCAGAGTTTCCCCAGATTATTCAGCAgGGTTTTGCATGTCTTCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCTGTCTCATACGAGAGAGTTGTTGCTTGGAAGGTGCTCAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2511 0.462 MSCKDGSKNGMDNGKYVRYTPEQVEALERFYHDCPKPSSIRRQQLIRECPILSHIEPRQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTQATKDTSCESAVTSGQHGLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPVALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSISGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPSGNRASNEYAGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRTPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3322 836 SUPERFAMILY Bet v1-like 158 368 - -
Ssu4g3322 836 CDD bZIP 67 106 - -
Ssu4g3322 836 SUPERFAMILY Bet v1-like 395 594 - -
Ssu4g3322 836 MobiDBLite consensus disorder prediction 120 146 - -
Ssu4g3322 836 Gene3D - 6 81 - -
Ssu4g3322 836 CDD START_ArGLABRA2_like 153 368 - -
Ssu4g3322 836 CDD homeodomain 15 75 IPR001356 GO:0003677
Ssu4g3322 836 Gene3D - 193 374 IPR023393 -
Ssu4g3322 836 SUPERFAMILY Homeodomain-like 14 76 IPR009057 -
Ssu4g3322 836 ProSiteProfiles START domain profile. 149 363 IPR002913 GO:0008289
Ssu4g3322 836 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 836 - -
Ssu4g3322 836 SMART START_1 158 368 IPR002913 GO:0008289
Ssu4g3322 836 Pfam Homeodomain 15 73 IPR001356 GO:0003677
Ssu4g3322 836 MobiDBLite consensus disorder prediction 120 152 - -
Ssu4g3322 836 Pfam MEKHLA domain 693 835 IPR013978 -
Ssu4g3322 836 Coils Coil 80 111 - -
Ssu4g3322 836 Pfam START domain 159 367 IPR002913 GO:0008289
Ssu4g3322 836 SMART HOX_1 12 78 IPR001356 GO:0003677
Ssu4g3322 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 836 IPR044830 GO:0003700
Ssu4g3322 836 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3322 Ssu-Chr4 83578383 83585455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3322 1 788 Homeobox Transcription Factor Family AT1G52150 85.063 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu4g3322 START 1.4e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3322 K09338 - gmx:100800165 1636.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3322 4 83578383 83585455 Ssu4g3322 4 83578383 83585455 ECH
Ssu8g0249 8 3668691 3675217 Ssu4g3322 4 83578383 83585455 PCT