Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3319 ATGCCGGTGCTGCGTAGCGGAGTGCGCAGGGGCCGGGCAGCAGCGAAGCAGCAAGAGCAGCAGCAGAGTCCGGAGGAGGGGGAGGCGATTGCGACTAGGACGCGGCGGCGGCGTGCGGCGGCGGCGGCAGCGGCAGTGCCGaagagtaataataataataataacaacaacaacaacaagcaACAGCAGGAGCAGGAGCAGGTGGTGGTAAATGAGAACGTAGTGGTTGCGGCGAAGGAAGAAGAGAATCGGGGATTGGAGGAAGGTGTTGGTGTTGGTGTGGGTGTGGGTGGAGCGGAGAAGGAAGAGGTAGGGGAGAAAGAGATGGGTAGGTATGACAGTGGGGGTCGGAGCAATGATAAGGCCAATGCCGGTGAAGATGACGCCAATACACCCCAGGTTCCTCAGAAGATTCAAGTAGGTAATTCCCCTTGGTATAAAGTAGAAAGAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATGTTGGAAGACGTTCTGGTGGAAATTTGAATGAGAGAACTGGACCTGGAGCTGTAGAGGTTGCATTAAAACTCGAGCACAGAACTAGTAAAGGATGTACCTATGGACCACCCTACGAGTGGCAAGTGTACAACACTCTCGGTGGCAGTCATGGTGTGCCACAAGTACACTACAAGGGCAGGCAGGGTGACTATTATGTCATGGTTATGGATATGTTGGGACCTAGCCTGTGGGATGTTTGGAATAATAACTCTCACACCATGTCCACTGAGATGGTTGCTTGTATTGCCATTGAAGCAATATCTATATTGGAAAAAATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACTCCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACTAAATGGAGGGATAGCACAACAGGCTCGCATGTGGAATATGACCAAAGGCCAGATGTTTTCAgGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCAAGCAGGAGGGATGACTTGGAATCTCTTGCATATACGCTGATTTTTCTTCTCCGAGGTCGCCTTCCTTGGCAAGGGTTCCAGGGAGAAAACAAAGGATTTCTGGTTTGCAAGAAGAAGATGGGAACATCTCCAGAGAACCTATGTTGCTTTTGTCCCCTACCTTTTAAACAGTTTGTTGAACATGTTGTGAACTTAAAGTTTGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGTCCTAACCCTGATATTAGACCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGCCGGTTGGTGATGGAAGAAGAGGACGATGAACAACCCAAAAAGAAGATTCGTATTGGTTTGCCAGCATCCCAGTGGATAAGTGTTTACAATGCTCGTAGACCAATGAAACAGAGATATCACTACAATGTATCAGATACAAGGCTATCCCAGCACATTGAGAAAGGAAATGAGGATGGTTTATATATTAGCAGTGTTGCTTCGTGTCAAAACCTATGGGCCTTAATCATGGATGCAGGGACAGGTTTCACTGCCCAAGTTTACGAACTCTCACCATTCTTTCTCCATAAGGAATGGATCATGGAGCACTgggaaaaaaattactatatcaGCGCAATTGCTGGAGCTGTAAATGGGAGCTCGCTAGTAGTAATGTCTAAGGGCACGCAGTATTTGCAGCAATCATACAAAGTTAGTGATTCATTTCCTTTCAAGTGGATTAACAAAAAGTGGAGGGAGGGCTTTTACGTGACTGCAATGGCCACCTCAGGGCAGAGATGGGGAGTAGTTATGTCTCGTGGTGCGGGATTTTCAGACCAGGTGGTTGAGCTAGATTTTCTGTATCCTAGTGAGGGGATTCACAAGCGGTGGGATTGCGGTTATAGAATCACTGCTACTGCTGCAACTCTTGACCAAGCTGCCTTTGTCCTGAGTGTGCCAAGGAGGAAGCCCTTGGATGAAACTCAGGAAACACTTAGGACTTCTGCTTTTCCTAGCACACATGTCAAGGAGAAATGGGCAAAGAACCTCTACATTGCTTCTGTTTGCTACGGACGTACAGTTTCTTGA 2130 0.4615 MPVLRSGVRRGRAAAKQQEQQQSPEEGEAIATRTRRRRAAAAAAAVPKSNNNNNNNNNNKQQQEQEQVVVNENVVVAAKEEENRGLEEGVGVGVGVGGAEKEEVGEKEMGRYDSGGRSNDKANAGEDDANTPQVPQKIQVGNSPWYKVERKLGKGGFGQVYVGRRSGGNLNERTGPGAVEVALKLEHRTSKGCTYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATKWRDSTTGSHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMGTSPENLCCFCPLPFKQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLVMEEEDDEQPKKKIRIGLPASQWISVYNARRPMKQRYHYNVSDTRLSQHIEKGNEDGLYISSVASCQNLWALIMDAGTGFTAQVYELSPFFLHKEWIMEHWEKNYYISAIAGAVNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATSGQRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITATAATLDQAAFVLSVPRRKPLDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3319 709 MobiDBLite consensus disorder prediction 1 67 - -
Ssu4g3319 709 ProSiteProfiles Protein kinase domain profile. 146 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3319 709 MobiDBLite consensus disorder prediction 46 67 - -
Ssu4g3319 709 ProSitePatterns Protein kinases ATP-binding region signature. 152 184 IPR017441 GO:0005524
Ssu4g3319 709 Pfam Protein kinase domain 146 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3319 709 SUPERFAMILY Protein kinase-like (PK-like) 146 425 IPR011009 -
Ssu4g3319 709 SMART serkin_6 146 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3319 709 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 ISOFORM X1 112 684 - -
Ssu4g3319 709 PANTHER CASEIN KINASE-RELATED 112 684 - -
Ssu4g3319 709 MobiDBLite consensus disorder prediction 100 124 - -
Ssu4g3319 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Ssu4g3319 709 Gene3D Transferase(Phosphotransferase) domain 1 112 464 - -
Ssu4g3319 709 CDD STKc_CK1 146 421 - -
Ssu4g3319 709 MobiDBLite consensus disorder prediction 89 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3319 Ssu-Chr4 83526857 83532322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3319 240 421 MAP Kinase Kinase Kinase AT5G50180 23.913 4.81e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Ssu4g3319 Pkinase 2.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3319 - - gmx:100799630 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3319 4 83526857 83532322 Ssu4g3319 4 83526857 83532322 ECH