Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3318 ATGGATAAGTTAGGTTTATCTGAATCTCCATTCCCTAAGCTCTCTCCAGATGagATACTGGAATTGGAAAGAATATACAAAGATATGGGAGAGAGACCACTTGATCGGAAGGTCTGCCAGGAGATTGCTAAACGTTTTAGTTCCTCATCAAACGGTGCTGCTAAAACTTCCTTGTCATGGCAACAGGTGCAGCAGTGGTTCAAAAATAGACAGAGAATGACACAGGATAAAGATAGTTCATCATTCAACCTGCTGAAACTATCTGCTGATCTTTCAGATTCATCTCTTTTAGGAAATGGAGATAAAAGctcttcaaattcaaaagGTAAACAAGTTGAAGATCTCTCAGAGTTGGCATTTGAAGCAAGATCTACAAAAGACGTTGCATGGCATGATGTTGCAATGTTCCTTAACTATAGAGTTATGAGCACAGGCGAACTTGAAGTCCGTGTACGATATGCTGGATTTGGTAAAGAGCAGGATGAGTGGATGAATGTGAAACAGGGGGTGCGGGAGAGATCTGTCCCATTAGTACCTTCAGAGTGTCACAAGGTGAAGGATGGGGATCTTGTGCTATGTTTCCTGGAAAGAGAAGATTATGCCCTCTATTGTGATGCTCGAGTTGTAAAAATCCAGAGGAAGTTACATGATCCAACAGAGTGTACGTGCACCTTTATTGTCCGATTTGTCCATGACGACACTGAGGAAGGAGTTTCTTGGAACAGGTTATGCTGTAGGCCTACACAAGAGGAATCTGCGTTCTACCCAAATCCTGCTCTTAATCCCACCCTGAATCCCATCCTAAATCTCACCCTAAATCCCATAGAGTCCTTGTGGGGATAA 843 0.4187 MDKLGLSESPFPKLSPDEILELERIYKDMGERPLDRKVCQEIAKRFSSSSNGAAKTSLSWQQVQQWFKNRQRMTQDKDSSSFNLLKLSADLSDSSLLGNGDKSSSNSKGKQVEDLSELAFEARSTKDVAWHDVAMFLNYRVMSTGELEVRVRYAGFGKEQDEWMNVKQGVRERSVPLVPSECHKVKDGDLVLCFLEREDYALYCDARVVKIQRKLHDPTECTCTFIVRFVHDDTEEGVSWNRLCCRPTQEESAFYPNPALNPTLNPILNLTLNPIESLWG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3318 280 Gene3D - 177 249 - -
Ssu4g3318 280 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 250 IPR039276 -
Ssu4g3318 280 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 1 1 250 - -
Ssu4g3318 280 ProSiteProfiles 'Homeobox' domain profile. 14 77 IPR001356 GO:0003677
Ssu4g3318 280 Pfam SAWADEE domain 117 244 IPR032001 GO:0003682
Ssu4g3318 280 CDD homeodomain 13 72 IPR001356 GO:0003677
Ssu4g3318 280 Pfam Homeodomain 15 70 IPR001356 GO:0003677
Ssu4g3318 280 Gene3D - 12 79 - -
Ssu4g3318 280 Gene3D - 115 176 - -
Ssu4g3318 280 SUPERFAMILY Homeodomain-like 14 71 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3318 Ssu-Chr4 83520108 83524551 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu4g3318 SAWADEE 7e-38 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3318 - - gmx:100800332 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3318 4 83520108 83524551 Ssu4g3318 4 83520108 83524551 ECH