Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3311 ATGATTCTGGTACGAAAACCCCATTGGGGGTTGCTTCTCCTTCTTCTCCACATTCACCGCAGCACCTGCTACCCCACAGAGCCCATGAACTGTACGGACACAACCCGCGTTTGCACTTCTTTCATGGCCTTCAAGCCCGAGGCAAACCACACGCTGACTCTGATTCAGAGCATGTTTGATGTGTTGCCTGGTGACGTCACTGTTGAAGGCAACGGGTGGGGTTACATGTTCGTAAGGAAGAACTGTTCCTGTGCTGCTGGTTTAAAAAAATACGTGTCCAACACCACCTTCACTGTGAAATCCAATGAGGGGTTGGTGTATGACATGGTGATGGATGCCTATGATGGCCTTGCTTTCCTTCCCAACACCACAAGGAGGGCGAGGAACGGTGCTGTTGTGTCGCTGAGGTTGTTCTGTGGGTGCTCCAGTGGACTGTGGAACTATTTCGTCAGTTATGTGATGAGAGATGGGGATAGTGTTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGTATGGATAGCATTGAGACTGTGAATGGCATTGGTAGTCCTGATAATGTCACTGTTGGTTCACTTTATTATATACCCCTCGATTCTGTTCCTGGTGATCCTTATCCCCGGAATAATGCTGCTCCACCAGTTCCTGTTCCTGCCCCatcctttgataatttttcagCTGATCAAGGCAATCATAAGGCTCATGTACCCTATGGATGGATTGTTGGGGGTTTAGGAGTTGGGCTTGTTGTAATAATATTAACTGTGATTCTCTGTGTTTGTCTGAGATCATCAAATTGTTTTGCTGATGCCAGAACTCATGACAAAGATGCTGAGGGCAAGATCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCAGGAAGGTACATATGTGGCAAACATGTTGACCAGAAGCAAACAGATGGTGAATCCAGCAATCACACGATTACCATTCCCAAACCTTCGACTTTAGGGCCTGATGTATTTAATATGGATAAGCCAGTAGTTTTTACATACGAGGAGATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGTTCTGTTTATTATAGCCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATGACAGCtactaaaacaaaagaatttatgTCAGAGATGAAAGTTTTGTGCAAGGCTCATCATGCTAATCtgGTAGAATTGATTGGCTATGCAGCTAGTCACGAGGAGCTTTTCCTAGTTTATGAATATGCTCAGAAGGGTTCACTCAGAAGCCATTTGCATGATCCTCAAAATAAAGGCCATTCCCCACTTTCTTGGATCATGAGGGTCCAGATTGCGCTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCACACAAAAACTCATTATGTCCACCGTGATATCAAGACAAGTAACATTCTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAGCGAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCCCCAGAATATTTGAGTGATGGTCTTGCAACAACTAAGAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAAGGATGCCATCATTCGGTCAGAAGGCACAATGACAAAAAATCCTGAAAGACGTTCACTGGCATCCATAATGCTGGCAGTTCTTAGGAACTCACCTGATTCCATGAGCATGTCAAGCTTGAGAGATTATATTGATCCAAATATGATGGACCTGTATCCCCATGACTGTGTATTTAAGGCAAGTCAGTTTCTccattttcatATGGCCATGCTGGCAAAGCAATGTGTGGATGATGACCCCATCTTACGACCTGATATGAGACAAGTTGTGATTTCCCTCTCACAGATTCTCCTCTCTTCTGTCGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 2013 0.4302 MILVRKPHWGLLLLLLHIHRSTCYPTEPMNCTDTTRVCTSFMAFKPEANHTLTLIQSMFDVLPGDVTVEGNGWGYMFVRKNCSCAAGLKKYVSNTTFTVKSNEGLVYDMVMDAYDGLAFLPNTTRRARNGAVVSLRLFCGCSSGLWNYFVSYVMRDGDSVESLASRFGVSMDSIETVNGIGSPDNVTVGSLYYIPLDSVPGDPYPRNNAAPPVPVPAPSFDNFSADQGNHKAHVPYGWIVGGLGVGLVVIILTVILCVCLRSSNCFADARTHDKDAEGKISHKFHILRNPSFFCGSGRYICGKHVDQKQTDGESSNHTITIPKPSTLGPDVFNMDKPVVFTYEEIFSSTDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMKVLCKAHHANLVELIGYAASHEELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKDAIIRSEGTMTKNPERRSLASIMLAVLRNSPDSMSMSSLRDYIDPNMMDLYPHDCVFKASQFLHFHMAMLAKQCVDDDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3311 670 Pfam LysM domain 152 189 IPR018392 -
Ssu4g3311 670 ProSitePatterns Protein kinases ATP-binding region signature. 358 379 IPR017441 GO:0005524
Ssu4g3311 670 SMART LysM_2 151 195 IPR018392 -
Ssu4g3311 670 Pfam Protein tyrosine and serine/threonine kinase 356 640 IPR001245 GO:0004672|GO:0006468
Ssu4g3311 670 ProSiteProfiles Protein kinase domain profile. 352 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3311 670 Gene3D Transferase(Phosphotransferase) domain 1 425 657 - -
Ssu4g3311 670 SMART serkin_6 352 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g3311 670 SUPERFAMILY LysM domain 150 195 IPR036779 -
Ssu4g3311 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Ssu4g3311 670 ProSiteProfiles LysM domain profile. 150 194 IPR018392 -
Ssu4g3311 670 Gene3D LysM domain 146 201 IPR036779 -
Ssu4g3311 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 29 670 IPR044812 GO:0019199|GO:0045087
Ssu4g3311 670 Gene3D Phosphorylase Kinase; domain 1 328 423 - -
Ssu4g3311 670 SUPERFAMILY Protein kinase-like (PK-like) 329 642 IPR011009 -
Ssu4g3311 670 PANTHER BNAA06G02020D PROTEIN 29 670 - -
Ssu4g3311 670 CDD LysM 150 194 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3311 Ssu-Chr4 83400296 83407378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3311 27 670 Receptor kinase-like Gene Family AT1G51940 68.098 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu4g3311 PK_Tyr_Ser-Thr 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3311 - - gmx:100796989 1228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3311 4 83400296 83407378 Ssu4g3311 4 83400296 83407378 ECH
Ssu8g0260 8 3849226 3854582 Ssu4g3311 4 83400296 83407378 PCT