Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3310 ATGTGGCAAAGAAGCCACAAGTCCTCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAAGCATCAAAAGATGCAacagagaaagaaatgaatcaCCACTCACTCTTGGTTACTTCTCAGCTCAGAAAATTTCTACTTCTGAAAAGCCAGGTTCAGGTGGGACTATGTTGCCCTCTGCATGGCCTTCCACATCCTACCACCAACACCAGGCTAAAGCTAAAGCTTCATCATTTCTTCAGCTCCAATCAAGTCAACAAAACATGATAGTGATGGGAAGGGATGTGCCACAACTCTGTTGTGTAGAGAAGAAGGCATTCTCACCCTCTTCTGCAAATACAGCTGGGTCCAATAGAACGGCTTCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCGTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAAGCTGCCTTCTGGGTCCCAGCAGCATCCACATGTTGCTCCAGACAAGGTTGCTAGTAAAATACCTACCAACAACTCTGTTAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCCATTGGGAGAAAAGTGGACATCAGTGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAGCTCTTTAGAGGCCTCCTTGCAGAGATGAATTTATCTCATATTTTCTCTTCCCCCTGCTGTTCTGCTCAAAGAGAATCCTGTGCTGGTGGAATTCAAAACAAGGACGAGGAAGAGAAAGCCAATAGGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAGATGCTTGTTGGAGATGTGCCGTGGCACATGTTTGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAGAGTTGTGATCTTCCTGCTTTTACCCGTGAGTTGGAATCTTCAACTTAA 939 0.4452 MWQRSHKSSEERKLELRLGPPGEESLNESIKRCNRERNESPLTLGYFSAQKISTSEKPGSGGTMLPSAWPSTSYHQHQAKAKASSFLQLQSSQQNMIVMGRDVPQLCCVEKKAFSPSSANTAGSNRTASGPVVGWPPIRSFRKNIASGSSSKLPSGSQQHPHVAPDKVASKIPTNNSVKGLFVKINMDGVPIGRKVDISAYDSYEKLSSAVDELFRGLLAEMNLSHIFSSPCCSAQRESCAGGIQNKDEEEKANRGLLVGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVLKSCDLPAFTRELESST 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3310 312 Pfam AUX/IAA family 14 301 IPR033389 -
Ssu4g3310 312 MobiDBLite consensus disorder prediction 1 19 - -
Ssu4g3310 312 MobiDBLite consensus disorder prediction 1 36 - -
Ssu4g3310 312 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 307 IPR003311 GO:0005634|GO:0006355
Ssu4g3310 312 SUPERFAMILY CAD & PB1 domains 173 295 - -
Ssu4g3310 312 Gene3D - 174 310 - -
Ssu4g3310 312 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 307 - -
Ssu4g3310 312 MobiDBLite consensus disorder prediction 146 170 - -
Ssu4g3310 312 ProSiteProfiles PB1 domain profile. 180 298 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3310 Ssu-Chr4 83377738 83380118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3310 183 312 B3 DNA Binding Superfamily AT3G61830 25.385 2.23e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu4g3310 AUX_IAA 1.8e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3310 K14484 - gmx:100793822 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3310 4 83377738 83380118 Ssu8g0262 8 3906802 3909474 ECH
Ssu4g3310 4 83377738 83380118 Ssu4g3310 4 83377738 83380118 ECH
Ssu8g0262 8 3906802 3909474 Ssu4g3310 4 83377738 83380118 PCT