Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3306 ATGGGGAAAGCTAGCAGGTGGTTGAAGGGGTTGTTGGgcatgaagaaggagaaggaccACAGTGACAATTCAGGGTCATTGGCCCCTgacaagaaggagaagaaaaggtgGAGTTTTGCTAAGCCAGGGAAGGATGTGGAACCTTCAGTTCCTGCCACTGATAACACCTGGCTCAGATCCTATATTGCTGATACAGAAAATGAGCAGAACAAACATGCAATTGCCGTGGCAGCCGCCACTGCTGCTGCTGCTGACGCTGCCATGGCTGCCGCTCAGGCGGCCGTGGCAGTTGTGAGGCTGACAAGCCAGGGTAGAGGAGCATTGTTCGGTGGAAGCAGGGAGAAGTGGGCTGCTGTGAAGATCCAAACTTTTTTTAGAGGCTATTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGGTATTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTTCGAACACAGCGAGCTCGTCGTTCCATGAGCAAAGAAAACAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTCTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGGCTACCTACATCCTATGAAACATCCTTGAATGGGTTTGATGAAAGCCCCAAGATTGTTGAAATTGACACATTCAAGACTCGATCAAGGTCTAGGCGCTTTACCTCTGCAATGTCTGAGTGTGGAGAAGACATGTCCTGTCATGCAATCTCATCCCCTCTTCCTTGTCCAGTCCCTGGTCGAATCTCAGTTCCTGATTGCAGACATCTTCAAGAATTTGATTGGTACTTCAATGTTGATGAGTGTAGATTCTCCACGGCTCATAGCACCCCACGTTTCACAAACTATGTGCGTCCTAATGCTCCAGCTACACCAGCCAAGAGTGTCTGTGGAGACACCTTCTTCAGATCTTGCTCCAATTACCCTAACTACATGGCCAATACTCAGTCATTCAAGGCAAAACTAAGGTCTTACAGTGCTCCAAAGCAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAATGATGGCAGCAAGAAACAGCATAAGTGGTGTTAGAATGCAAAGGCCATCATCTAATTTCTTCCAGACTCAAGAATCCTGGAATTTTTGA 1188 0.4487 MGKASRWLKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKPGKDVEPSVPATDNTWLRSYIADTENEQNKHAIAVAAATAAAADAAMAAAQAAVAVVRLTSQGRGALFGGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSMSKENRFLPEVLARKSLERFDETRSEFHSKRLPTSYETSLNGFDESPKIVEIDTFKTRSRSRRFTSAMSECGEDMSCHAISSPLPCPVPGRISVPDCRHLQEFDWYFNVDECRFSTAHSTPRFTNYVRPNAPATPAKSVCGDTFFRSCSNYPNYMANTQSFKAKLRSYSAPKQRPEPKKRLSLNEMMAARNSISGVRMQRPSSNFFQTQESWNF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3306 395 MobiDBLite consensus disorder prediction 1 51 - -
Ssu4g3306 395 MobiDBLite consensus disorder prediction 10 42 - -
Ssu4g3306 395 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Ssu4g3306 395 PANTHER IQ-DOMAIN 5-RELATED 1 385 - -
Ssu4g3306 395 Pfam IQ calmodulin-binding motif 141 155 IPR000048 GO:0005515
Ssu4g3306 395 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Ssu4g3306 395 PANTHER PROTEIN IQ-DOMAIN 14-LIKE 1 385 - -
Ssu4g3306 395 Pfam Protein of unknown function (DUF4005) 303 375 IPR025064 -
Ssu4g3306 395 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Ssu4g3306 395 SMART iq_5 113 135 IPR000048 GO:0005515
Ssu4g3306 395 SMART iq_5 136 157 IPR000048 GO:0005515
Ssu4g3306 395 Gene3D - 56 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3306 Ssu-Chr4 83326803 83328573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3306 1 379 IQD Protein Family AT3G16490 55.471 1.97e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3306 - - gmx:100797686 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3306 4 83326803 83328573 Ssu4g3306 4 83326803 83328573 ECH
Ssu8g0263 8 3939139 3940773 Ssu4g3306 4 83326803 83328573 PCT