Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3299 ATgAGTGGAAGAACAAGTTTGGGGAACGCAATTTATCGCTATATGTATTCTGTAGACAAGTTCTCACCCGGTCACCTTCTTTGCTGTCTCAAAATAAGTTCTAAACACGAAGCACTTGAGCTGGCAGCTGAGAAAGCTGAGACTTTGTTGTTTTGCTTGAAGCAAACATATCCTAAATCGCGCATGAACCCGGTCGACAATCCACCACCTGTGGCTGAACTTTTCGGTAGGGCACACACTGAGTCGACTCAATTGCTGTTAGAAAAATTTGTGTACTTTAAGGTTGGGTTCATGGTCGCGAATATCGTGATCGCGAATCACGAACTTGAAGAGAAAACGAAGATCAAGTTTTGTATAGTGGATTTTGAGATTGGACAAGGGATGCAGTACGTGCACCTTCTCAACGCAACGACAATGGCCGGGAAATCAATCACGGCAAGAACCTCAACGATTGACATGGACAACGTGATTGTTGATCAGGTTGAAGCGGCACATTGA 498 0.4418 MSGRTSLGNAIYRYMYSVDKFSPGHLLCCLKISSKHEALELAAEKAETLLFCLKQTYPKSRMNPVDNPPPVAELFGRAHTESTQLLLEKFVYFKVGFMVANIVIANHELEEKTKIKFCIVDFEIGQGMQYVHLLNATTMAGKSITARTSTIDMDNVIVDQVEAAH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3299 165 Pfam GRAS domain family 76 136 IPR005202 -
Ssu4g3299 165 ProSiteProfiles PRONE domain profile. 1 165 IPR005512 GO:0005085
Ssu4g3299 165 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 141 IPR005202 -
Ssu4g3299 165 Gene3D PRONE domain, subdomain 2 1 44 - -
Ssu4g3299 165 PANTHER SCARECROW-LIKE PROTEIN 8 49 141 IPR030013 -
Ssu4g3299 165 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 2 42 IPR005512 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3299 Ssu-Chr4 83167229 83168123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3299 70 156 GRAS Transcription Factor Family AT5G52510 37.778 4.39e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu4g3299 GRAS 8.4e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3299 - - gmx:100808172 111.694