Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3289 atgatgatggtggcGGTAGTAATAGTCAATGGTGGCGGTTGTGGTAGTGCCGACGACGGTAGTTGTGGCGGTACCGGTGGTGATTGTGGCTTGCTAGtcgtgatggtggtggcagagtcaatgatggtggtgacattgcctgtggtggtggcagcaacacTAGTGGTTGTGAtcgtggttgtggtggtggaggtgacgatggtagtggtgatgaagcttatggtggtggaggtgatgctaGTGGTCATGGTAGTTGTGACAGTAGTGATGGGTGtggtcatggtggtgtcggtggtcatggtggtggtgatagcggtggtggtggtggtgacggtggctaCGGAGATGGCGGCAGCAGTAGTAGTGgcgatgatagtggtggtgataatggcggtggttgtggtggtgataatggcggtggttgtggtggtggtggtggcaagaaagactattgtcaaatataatgatagagaaagaaaaggttgGGGTGGCCGGGTCGGAACAAAATCAAAGAAAGAGGTTTGGGAGTGGAAGATGGCAACGACGCTGGTAAATCAAATGTTGGAAGGAGGAGCGACGGCGCAGCCTCCAGGGACGGACATGACCGGAATATGCTTCCGAGACCAGCTGTGGCTTAACAGCTTCCCTCTGGATCGCAACTTGGTCTTCGATTACTTCGCACTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGTATGCGCTCCGTTCACCCCCTCGACCTCTCTCAACTCTCGAAAATGACGGGGACAGAGTATGTGCTCAGCGAAGTCATGGAGCCCCACCTCTTCGTCATTCGCAAGCAAAAGAGAGATAGCCCCGACAAAGTTACACCTATGCTCGCCTATTACGTCCTCGATGGTTCAATTTACCAGGCTCCACAACTATGTAATGTTTTTGCCGCCAGAATTGGAAGGGCTCTTTATTACATACAAAAGGCCTTTACTACAGCTGCCTCCAAGTTGGAGAAGATTGGACATGTTGATTCTGAAAATGAGACTGCATTGCTCGAATCAAAGATTGGTAAGGAGACAATTGACATAAAGGAAGTTAAGCGAGTGGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCACCGTTTCCAGAAGGGTATGTTCCGCCTCCAACAGCAGAAACTGAGAAAGGCACTGAATCTCAGGAAGCAGCAGAAACGCAAGCTCCTACTGCCGATCCCATAATTGATCAAGGACCagcaaaaagaatgaaattttga 1281 0.3669 MMMVAVVIVNGGGCGSADDGSCGGTGGDCGLLVVMVVAESMMVVTLPVVVAATLVVVIVVVVVEVTMVVVMKLMVVEVMLVVMVVVTVVMGVVMVVSVVMVVVIAVVVVVTVATEMAAAVVVAMIVVVIMAVVVVVIMAVVVVVVVARKTIVKYNDRERKGWGGRVGTKSKKEVWEWKMATTLVNQMLEGGATAQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDLSQLSKMTGTEYVLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGHVDSENETALLESKIGKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTESQEAAETQAPTADPIIDQGPAKRMKF 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3289 426 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 195 426 - -
Ssu4g3289 426 Gene3D Mediator complex, subunit Med6 198 327 IPR038566 -
Ssu4g3289 426 MobiDBLite consensus disorder prediction 373 389 - -
Ssu4g3289 426 MobiDBLite consensus disorder prediction 372 426 - -
Ssu4g3289 426 PANTHER MED-6-RELATED 195 426 IPR007018 GO:0003712|GO:0006357|GO:0016592
Ssu4g3289 426 Pfam MED6 mediator sub complex component 204 329 IPR007018 GO:0003712|GO:0006357|GO:0016592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Ssu4g3289 Med6 3.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3289 K15128 - gmx:100792248 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3289 4 82752152 82759393 Ssu4g3289 4 82752152 82759393 ECH