Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3285 ATGTCGTCAACCTCAAAAACGTCATCCAATATAATGAGCTTCGATCTCGTACACTCCCAGATTGGGCAAAGTGACAGGGCATCCCGAGGGGCATCTCCCCTGCTTACGGCTATGCGAGGGCACAACCATTACGGTCGAAGTCCTATGTCAGGTGGCAAAGAGTTTTCGTCTACTGAGTATGATTGGACTTTTGGGCATGAGCCTTGGTCATGTGTCACAGAGATTAGAGACCTGTTGAAGAAAGCAAGGGTGTGGTTGGGAACCTTTGACTCTGCAGAGGAAGTTGCTCGAGCCTACGACACTGCCACTCGGACTCTCCGAGGTCCCAAGGCCAAGACCAATTTCCCTCTCTCGCCTTTCTGTTACCAACACCCCACCACCGATCCTTTCTTCTACACGAGTTTCCATGaccaccaccacaacaacaaaCTTAACAACCCCCTGAGACCCCCCTCAAGTGGCATGAGCAACACCATTAAGTCCTTTAGTGGGCCTCACCTTCCAACCACCACGATTATAATGTCGTTTTTTATCTCTACGCGGAGATACGTGCGCACTCCCCTTCTTGTCCCCAAAGACTGGCATAGTGACTATAACTCCTCTTCCTTTATCATTGATGATGGTGATAACATCATCTATCGTCGTTTCGACCTCCTTTGCCGTTCGATCTCAACGCGTACACCGTTTGATGATGCTGCCTTGAATGACGATCTTCATTGCACCATGCTTTGCCTTTGA 738 0.481 MSSTSKTSSNIMSFDLVHSQIGQSDRASRGASPLLTAMRGHNHYGRSPMSGGKEFSSTEYDWTFGHEPWSCVTEIRDLLKKARVWLGTFDSAEEVARAYDTATRTLRGPKAKTNFPLSPFCYQHPTTDPFFYTSFHDHHHNNKLNNPLRPPSSGMSNTIKSFSGPHLPTTTIIMSFFISTRRYVRTPLLVPKDWHSDYNSSSFIIDDGDNIIYRRFDLLCRSISTRTPFDDAALNDDLHCTMLCL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3285 245 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 67 210 - -
Ssu4g3285 245 SUPERFAMILY DNA-binding domain 70 118 IPR016177 GO:0003677
Ssu4g3285 245 Gene3D AP2/ERF domain 66 118 IPR036955 GO:0003700|GO:0006355
Ssu4g3285 245 SMART rav1_2 68 122 IPR001471 GO:0003700|GO:0006355
Ssu4g3285 245 CDD AP2 68 118 IPR001471 GO:0003700|GO:0006355
Ssu4g3285 245 PANTHER ETHYLENE RESPONSE FACTOR 67 210 - -
Ssu4g3285 245 ProSiteProfiles AP2/ERF domain profile. 42 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3285 Ssu-Chr4 82657584 82661511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3285 66 192 AP2-EREBP Transcription Factor Family AT1G50640 49.296 3.34e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3285 K09286 - gmx:100803943 224.557